Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51570 * 135.78543 * 2 1 4 4 C 1.53839 * 86.76069 * 154.83932 * 3 2 1 5 5 C 1.52996 * 113.65816 * 270.22501 * 4 3 2 6 6 C 1.50696 * 113.65692 * 139.26470 * 4 3 2 7 7 H 1.07999 * 120.00319 * 0.02562 * 6 4 3 8 8 C 1.37885 * 119.99717 * 180.02562 * 6 4 3 9 9 N 1.31516 * 119.99913 * 180.02562 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 0.02562 * 8 6 4 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.51579 * 135.77584 * 179.97438 * 2 1 3 15 15 H 1.08000 * 119.99512 * 0.02562 * 1 2 3 16 16 H 1.07999 * 120.00571 * 179.97438 * 1 2 3 17 17 H 1.09006 * 113.67091 * 40.37364 * 3 2 1 18 18 H 1.08997 * 113.75293 * 269.31992 * 3 2 1 19 19 H 1.09008 * 109.46768 * 298.32645 * 5 4 3 20 20 H 1.08993 * 109.47796 * 58.32736 * 5 4 3 21 21 H 1.09001 * 109.46883 * 178.33487 * 5 4 3 22 22 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 23 23 H 1.09003 * 113.66714 * 90.69920 * 14 2 1 24 24 H 1.08996 * 113.66621 * 319.61925 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0570 0.0000 4 6 3.3035 0.0000 0.6530 5 6 3.2460 0.0015 2.1819 6 6 4.7129 -0.0001 0.1195 7 1 4.9992 0.7017 -0.6498 8 6 5.6370 -0.8963 0.6137 9 7 6.8671 -0.8961 0.1485 10 14 5.1416 -2.1106 1.9439 11 1 5.3820 -1.5073 3.2794 12 1 3.7006 -2.4401 1.8016 13 1 5.9485 -3.3498 1.8081 14 6 2.3963 -1.0572 0.0005 15 1 -0.5399 0.9354 -0.0004 16 1 -0.5401 -0.9352 -0.0004 17 1 2.1797 1.9073 0.6467 18 1 2.7193 1.3546 -0.9976 19 1 3.5889 0.9657 2.5574 20 1 2.2201 -0.1710 2.5071 21 1 3.8881 -0.7889 2.5704 22 1 7.5173 -1.5263 0.4964 23 1 2.7183 -1.3541 -0.9977 24 1 2.1794 -1.9070 0.6476 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218563590.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = 46.476536 kcal Electronic energy + Delta-G solvation = -8164.615728 eV Core-core repulsion = 6658.631952 eV Total energy + Delta-G solvation = -1505.983775 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.45914 -32.61019 -30.55131 -27.00479 -25.08600 -24.92192 -19.34891 -16.99209 -16.23336 -15.16603 -13.99259 -13.82976 -13.17516 -12.59224 -12.43877 -12.01498 -11.14075 -10.85191 -10.58229 -10.05609 -9.85432 -9.53557 -8.92079 -8.80154 -8.50855 -8.34567 -6.07746 -4.07110 2.88945 3.28561 3.40040 3.43589 4.42064 5.13108 5.27645 5.56965 5.87675 6.07453 6.25479 6.36663 6.53296 6.60010 6.69379 6.72392 6.91837 7.01799 7.06398 7.25913 7.79438 7.82155 8.54735 8.94976 9.56153 11.05257 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.080170 B = 0.022686 C = 0.020490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.175952 B = 1233.919289 C = 1366.177362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.125 4.125 3 C -0.096 4.096 4 C 0.027 3.973 5 C -0.130 4.130 6 C -0.500 4.500 7 H 0.076 0.924 8 C 0.070 3.930 9 N -0.901 5.901 10 Si 0.897 3.103 11 H -0.285 1.285 12 H -0.261 1.261 13 H -0.305 1.305 14 C -0.115 4.115 15 H 0.093 0.907 16 H 0.093 0.907 17 H 0.056 0.944 18 H 0.087 0.913 19 H 0.054 0.946 20 H 0.036 0.964 21 H 0.040 0.960 22 H 0.264 0.736 23 H 0.089 0.911 24 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 0.121 2.043 8.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.125 4.125 3 C -0.133 4.133 4 C 0.026 3.974 5 C -0.187 4.187 6 C -0.538 4.538 7 H 0.094 0.906 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.730 3.270 11 H -0.213 1.213 12 H -0.186 1.186 13 H -0.234 1.234 14 C -0.152 4.152 15 H 0.112 0.888 16 H 0.112 0.888 17 H 0.074 0.926 18 H 0.105 0.895 19 H 0.073 0.927 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.107 0.893 24 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.172 0.045 2.045 8.425 hybrid contribution -0.154 -0.694 0.776 1.053 sum -8.326 -0.650 2.821 8.815 Atomic orbital electron populations 1.22601 0.93702 1.00725 1.08618 1.23459 0.93653 1.00782 0.94643 1.22367 0.94119 0.95739 1.01034 1.19514 0.94690 0.92057 0.91094 1.21904 0.98732 1.00688 0.97342 1.20873 0.91882 1.19054 1.21990 0.90621 1.25051 0.94640 0.97030 0.96470 1.69905 1.03428 1.37313 1.43206 0.86805 0.78488 0.79959 0.81729 1.21275 1.18618 1.23354 1.22854 0.94448 0.96346 1.01546 0.88832 0.88845 0.92569 0.89484 0.92717 0.94498 0.94137 0.92662 0.89252 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.67 14.71 29.01 0.43 -3.24 14 2 C -0.13 -2.44 6.60 -100.29 -0.66 -3.11 14 3 C -0.10 -1.98 7.19 -27.02 -0.19 -2.17 14 4 C 0.03 0.64 0.71 -154.88 -0.11 0.53 14 5 C -0.13 -2.90 8.17 37.16 0.30 -2.59 14 6 C -0.50 -14.03 9.03 -34.44 -0.31 -14.34 14 7 H 0.08 2.29 8.06 -52.49 -0.42 1.86 14 8 C 0.07 2.01 5.46 -17.82 -0.10 1.91 14 9 N -0.90 -27.62 13.96 55.43 0.77 -26.85 14 10 Si 0.90 22.40 23.98 -169.99 -4.08 18.33 14 11 H -0.28 -6.98 6.95 56.52 0.39 -6.58 14 12 H -0.26 -6.15 5.02 56.52 0.28 -5.87 14 13 H -0.30 -7.67 7.11 56.52 0.40 -7.27 14 14 C -0.11 -2.51 6.39 -27.02 -0.17 -2.68 14 15 H 0.09 1.39 8.06 -52.49 -0.42 0.96 14 16 H 0.09 1.42 8.06 -52.49 -0.42 1.00 14 17 H 0.06 1.07 8.10 -51.93 -0.42 0.65 14 18 H 0.09 1.79 8.09 -51.93 -0.42 1.37 14 19 H 0.05 1.15 8.14 -51.92 -0.42 0.73 14 20 H 0.04 0.73 7.70 -51.93 -0.40 0.33 14 21 H 0.04 0.95 2.15 -51.93 -0.11 0.83 14 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 14 23 H 0.09 1.98 8.09 -51.93 -0.42 1.56 14 24 H 0.05 1.19 6.83 -51.93 -0.35 0.84 14 LS Contribution 196.86 15.07 2.97 2.97 Total: -1.00 -29.32 196.86 -4.23 -33.55 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -3.08 Total: -2.32 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -0.82 Total: -25.68 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.77 Total: -26.85 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.08 Total: 18.33 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -29.32 -4.23 -33.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218563590.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.030 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds