Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 C 1.50704 * 112.84750 * 61.68499 * 3 2 1 5 5 H 1.07995 * 120.00014 * 234.34633 * 4 3 2 6 6 C 1.37874 * 119.99729 * 54.62052 * 4 3 2 7 7 N 1.31517 * 120.00172 * 9.71540 * 6 4 3 8 8 Si 1.86805 * 119.99887 * 189.71173 * 6 4 3 9 9 H 1.48499 * 109.47104 * 90.00377 * 8 6 4 10 10 H 1.48503 * 109.46890 * 210.00318 * 8 6 4 11 11 H 1.48503 * 109.47092 * 329.99765 * 8 6 4 12 12 C 1.53783 * 113.69230 * 192.95253 * 3 2 1 13 13 C 1.53782 * 87.08140 * 89.12826 * 12 3 2 14 14 C 1.53780 * 113.61582 * 290.49125 * 3 2 1 15 15 H 1.09002 * 109.47359 * 55.14487 * 1 2 3 16 16 H 1.09004 * 109.46939 * 175.14245 * 1 2 3 17 17 H 1.08995 * 109.47103 * 295.14362 * 1 2 3 18 18 H 1.08999 * 109.47180 * 240.00779 * 2 1 3 19 19 H 1.08994 * 109.47333 * 120.00467 * 2 1 3 20 20 H 0.97004 * 119.99917 * 180.02562 * 7 6 4 21 21 H 1.08999 * 113.61659 * 203.68224 * 12 3 2 22 22 H 1.08998 * 113.61033 * 334.58404 * 12 3 2 23 23 H 1.09000 * 113.61659 * 270.89035 * 13 12 3 24 24 H 1.08997 * 113.61310 * 139.97742 * 13 12 3 25 25 H 1.08998 * 113.61475 * 25.34529 * 14 3 2 26 26 H 1.09000 * 113.61094 * 156.25160 * 14 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6139 2.2138 1.2226 5 1 1.0926 3.1533 1.1139 6 6 1.8947 1.7226 2.4800 7 7 2.6948 0.6880 2.6183 8 14 1.1388 2.5268 3.9871 9 1 -0.1608 1.8777 4.2952 10 1 2.0566 2.3710 5.1441 11 1 0.9198 3.9712 3.7201 12 6 3.5398 1.5677 -0.3156 13 6 3.1404 1.6528 -1.7983 14 6 1.7802 2.1877 -1.3199 15 1 -0.3634 0.5873 -0.8433 16 1 -0.3633 -1.0240 -0.0870 17 1 -0.3633 0.4366 0.9302 18 1 1.8933 -0.5137 -0.8900 19 1 1.8933 -0.5139 0.8899 20 1 2.8920 0.3423 3.5029 21 1 3.9919 2.4823 0.0680 22 1 4.1139 0.6747 -0.0688 23 1 3.0792 0.6822 -2.2904 24 1 3.7206 2.3805 -2.3656 25 1 0.9339 1.7953 -1.8836 26 1 1.7513 3.2719 -1.2107 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219658587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = 1.955286 kcal Electronic energy + Delta-G solvation = -8712.960049 eV Core-core repulsion = 7177.734209 eV Total energy + Delta-G solvation = -1535.225840 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.02702 -32.36824 -30.66483 -26.13933 -24.35367 -22.95180 -20.96153 -17.45730 -15.90897 -14.62680 -14.11076 -13.53689 -12.69807 -12.34621 -11.49207 -11.31673 -11.08088 -10.87905 -10.49606 -10.35437 -10.19386 -9.74688 -9.66025 -9.01604 -8.60720 -8.45210 -8.07181 -5.90992 -3.92888 3.34155 3.41504 3.44281 4.50190 5.35769 5.96173 5.98854 6.10084 6.33227 6.51914 6.55895 6.59594 6.87439 6.90480 7.02286 7.13748 7.21405 7.44146 7.48844 7.66740 7.80851 7.98337 8.23382 8.60451 9.05154 9.69107 11.15122 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.064147 B = 0.022510 C = 0.020618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.394906 B = 1243.597812 C = 1357.742699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C 0.067 3.933 4 C -0.500 4.500 5 H 0.054 0.946 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.880 3.120 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.276 1.276 12 C -0.115 4.115 13 C -0.153 4.153 14 C -0.139 4.139 15 H 0.035 0.965 16 H 0.024 0.976 17 H 0.057 0.943 18 H 0.019 0.981 19 H 0.085 0.915 20 H 0.257 0.743 21 H 0.061 0.939 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 0.062 -3.723 3.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.133 4.133 3 C 0.066 3.934 4 C -0.538 4.538 5 H 0.072 0.928 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.708 3.292 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.201 1.201 12 C -0.153 4.153 13 C -0.190 4.190 14 C -0.177 4.177 15 H 0.054 0.946 16 H 0.043 0.957 17 H 0.076 0.924 18 H 0.038 0.962 19 H 0.104 0.896 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.238 -0.052 -3.576 3.784 hybrid contribution -0.361 0.425 0.893 1.053 sum -1.599 0.373 -2.682 3.145 Atomic orbital electron populations 1.21580 0.97986 0.97966 1.01282 1.21206 0.93934 0.97954 1.00158 1.19174 0.91320 0.91812 0.91056 1.20999 1.36615 1.05973 0.90203 0.92809 1.24920 0.94716 0.95168 0.98506 1.69961 1.34395 1.25106 1.22624 0.86795 0.79343 0.79879 0.83181 1.20766 1.21475 1.20061 1.22834 1.00361 0.99938 0.92177 1.22924 0.98702 0.99239 0.98175 1.23052 0.95003 0.99478 1.00119 0.94594 0.95715 0.92425 0.96244 0.89615 0.93286 0.92035 0.93513 0.91946 0.93946 0.93887 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.58 37.16 0.36 -2.48 15 2 C -0.09 -2.27 5.06 -26.73 -0.14 -2.40 15 3 C 0.07 1.66 0.40 -154.84 -0.06 1.59 15 4 C -0.50 -13.69 7.51 -34.44 -0.26 -13.94 15 5 H 0.05 1.48 7.83 -52.49 -0.41 1.07 15 6 C 0.07 1.88 5.24 -17.82 -0.09 1.79 15 7 N -0.88 -25.02 11.44 55.43 0.63 -24.39 15 8 Si 0.88 21.32 29.55 -169.99 -5.02 16.29 15 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 12 C -0.12 -2.75 7.06 -25.92 -0.18 -2.93 15 13 C -0.15 -3.13 7.73 -25.91 -0.20 -3.33 15 14 C -0.14 -3.04 7.03 -25.92 -0.18 -3.23 15 15 H 0.03 0.72 6.89 -51.93 -0.36 0.37 15 16 H 0.02 0.47 8.14 -51.93 -0.42 0.04 15 17 H 0.06 1.34 7.63 -51.93 -0.40 0.94 15 18 H 0.02 0.42 7.30 -51.93 -0.38 0.05 15 19 H 0.09 2.27 6.32 -51.93 -0.33 1.95 15 20 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 21 H 0.06 1.51 8.09 -51.93 -0.42 1.09 15 22 H 0.05 1.14 8.10 -51.93 -0.42 0.72 15 23 H 0.06 1.21 7.60 -51.93 -0.39 0.81 15 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.04 0.88 6.97 -51.93 -0.36 0.52 15 26 H 0.06 1.38 8.09 -51.93 -0.42 0.96 15 LS Contribution 211.33 15.07 3.18 3.18 Total: -1.00 -27.64 211.33 -5.83 -33.48 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -3.87 Total: -3.63 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -0.76 Total: -24.93 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.63 Total: -24.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -27.64 -5.83 -33.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219658587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.432 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds