Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 C 1.50704 * 112.84750 * 61.68499 * 3 2 1 5 5 H 1.07995 * 120.00014 * 234.34633 * 4 3 2 6 6 C 1.37874 * 119.99729 * 54.62052 * 4 3 2 7 7 N 1.31517 * 120.00172 * 9.71540 * 6 4 3 8 8 Si 1.86805 * 119.99887 * 189.71173 * 6 4 3 9 9 H 1.48499 * 109.47104 * 90.00377 * 8 6 4 10 10 H 1.48503 * 109.46890 * 210.00318 * 8 6 4 11 11 H 1.48503 * 109.47092 * 329.99765 * 8 6 4 12 12 C 1.53783 * 113.69230 * 192.95253 * 3 2 1 13 13 C 1.53782 * 87.08140 * 89.12826 * 12 3 2 14 14 C 1.53780 * 113.61582 * 290.49125 * 3 2 1 15 15 H 1.09002 * 109.47359 * 55.14487 * 1 2 3 16 16 H 1.09004 * 109.46939 * 175.14245 * 1 2 3 17 17 H 1.08995 * 109.47103 * 295.14362 * 1 2 3 18 18 H 1.08999 * 109.47180 * 240.00779 * 2 1 3 19 19 H 1.08994 * 109.47333 * 120.00467 * 2 1 3 20 20 H 0.97004 * 119.99917 * 180.02562 * 7 6 4 21 21 H 1.08999 * 113.61659 * 203.68224 * 12 3 2 22 22 H 1.08998 * 113.61033 * 334.58404 * 12 3 2 23 23 H 1.09000 * 113.61659 * 270.89035 * 13 12 3 24 24 H 1.08997 * 113.61310 * 139.97742 * 13 12 3 25 25 H 1.08998 * 113.61475 * 25.34529 * 14 3 2 26 26 H 1.09000 * 113.61094 * 156.25160 * 14 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6139 2.2138 1.2226 5 1 1.0926 3.1533 1.1139 6 6 1.8947 1.7226 2.4800 7 7 2.6948 0.6880 2.6183 8 14 1.1388 2.5268 3.9871 9 1 -0.1608 1.8777 4.2952 10 1 2.0566 2.3710 5.1441 11 1 0.9198 3.9712 3.7201 12 6 3.5398 1.5677 -0.3156 13 6 3.1404 1.6528 -1.7983 14 6 1.7802 2.1877 -1.3199 15 1 -0.3634 0.5873 -0.8433 16 1 -0.3633 -1.0240 -0.0870 17 1 -0.3633 0.4366 0.9302 18 1 1.8933 -0.5137 -0.8900 19 1 1.8933 -0.5139 0.8899 20 1 2.8920 0.3423 3.5029 21 1 3.9919 2.4823 0.0680 22 1 4.1139 0.6747 -0.0688 23 1 3.0792 0.6822 -2.2904 24 1 3.7206 2.3805 -2.3656 25 1 0.9339 1.7953 -1.8836 26 1 1.7513 3.2719 -1.2107 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219658587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = -12.973642 kcal Electronic energy + Delta-G solvation = -8713.607416 eV Core-core repulsion = 7177.734209 eV Total energy + Delta-G solvation = -1535.873207 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.85744 -34.40426 -32.50797 -28.14641 -26.17253 -24.82448 -22.76899 -19.38357 -17.87149 -16.66462 -15.90442 -15.38467 -14.52141 -14.22405 -13.36762 -13.17335 -12.93029 -12.80492 -12.33417 -12.25980 -11.95898 -11.61090 -11.54670 -10.88380 -10.54817 -10.33845 -10.07179 -7.99964 -6.07397 1.40769 1.43494 1.51040 2.48026 3.25221 4.21209 4.27399 4.32453 4.55524 4.74183 4.82143 4.96513 5.09306 5.18456 5.27418 5.32479 5.39734 5.57368 5.64791 5.71838 5.87604 6.02118 6.32068 6.55327 6.97209 7.56932 9.04338 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.064147 B = 0.022510 C = 0.020618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.394906 B = 1243.597812 C = 1357.742699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 C 0.044 3.956 4 C -0.513 4.513 5 H 0.044 0.956 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.934 3.066 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.272 1.272 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.133 4.133 15 H 0.051 0.949 16 H 0.048 0.952 17 H 0.033 0.967 18 H 0.036 0.964 19 H 0.053 0.947 20 H 0.256 0.744 21 H 0.043 0.957 22 H 0.029 0.971 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 0.210 -4.690 5.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.130 4.130 3 C 0.044 3.956 4 C -0.552 4.552 5 H 0.062 0.938 6 C -0.174 4.174 7 N -0.546 5.546 8 Si 0.761 3.239 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.197 1.197 12 C -0.160 4.160 13 C -0.168 4.168 14 C -0.170 4.170 15 H 0.070 0.930 16 H 0.067 0.933 17 H 0.052 0.948 18 H 0.055 0.945 19 H 0.072 0.928 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.840 0.103 -4.549 4.908 hybrid contribution -0.158 0.382 1.191 1.261 sum -1.998 0.485 -3.358 3.938 Atomic orbital electron populations 1.21496 0.96378 0.99606 1.00648 1.21120 0.95388 0.97156 0.99364 1.19394 0.91977 0.92559 0.91695 1.21283 1.36303 1.05902 0.91667 0.93769 1.25528 0.95127 0.95801 1.00912 1.70076 1.35340 1.26206 1.22930 0.85930 0.78594 0.79139 0.80217 1.20335 1.21411 1.19722 1.22772 0.99572 0.98301 0.95371 1.22807 0.97453 1.00679 0.95895 1.22961 0.96563 0.99054 0.98440 0.93042 0.93327 0.94783 0.94543 0.92821 0.93485 0.93772 0.95180 0.90280 0.91530 0.92214 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.58 71.98 0.69 -4.46 15 2 C -0.09 -4.31 5.06 30.59 0.15 -4.16 15 3 C 0.04 2.15 0.40 -52.40 -0.02 2.13 15 4 C -0.51 -28.07 7.51 25.60 0.19 -27.88 15 5 H 0.04 2.43 7.83 -2.91 -0.02 2.41 15 6 C 0.03 1.41 5.24 84.65 0.44 1.85 15 7 N -0.91 -51.98 11.44 21.45 0.25 -51.73 15 8 Si 0.93 43.87 29.55 68.60 2.03 45.89 15 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 15 12 C -0.12 -5.76 7.06 31.12 0.22 -5.54 15 13 C -0.13 -4.98 7.73 31.12 0.24 -4.74 15 14 C -0.13 -5.48 7.03 31.12 0.22 -5.27 15 15 H 0.05 1.94 6.89 -2.39 -0.02 1.93 15 16 H 0.05 1.74 8.14 -2.38 -0.02 1.73 15 17 H 0.03 1.54 7.63 -2.39 -0.02 1.52 15 18 H 0.04 1.54 7.30 -2.39 -0.02 1.52 15 19 H 0.05 2.85 6.32 -2.39 -0.02 2.83 15 20 H 0.26 14.14 8.31 -92.70 -0.77 13.37 15 21 H 0.04 2.18 8.09 -2.39 -0.02 2.16 15 22 H 0.03 1.47 8.10 -2.39 -0.02 1.45 15 23 H 0.08 2.76 7.60 -2.39 -0.02 2.74 15 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.06 2.25 6.97 -2.39 -0.02 2.23 15 26 H 0.06 2.49 8.09 -2.39 -0.02 2.47 15 Total: -1.00 -57.47 211.33 5.54 -51.93 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.13 Total: 1.97 kcal Atomic # 6 Polarization: -50.20 SS G_CDS: 2.14 Total: -48.06 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.25 Total: -51.73 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -57.47 5.54 -51.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219658587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.957 kcal (2) G-P(sol) polarization free energy of solvation -57.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds