Wall clock time and date at job start Mon Mar 30 2020 01:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31679 * 1 3 3 Si 1.86793 * 120.00100 * 2 1 4 4 H 1.48501 * 109.46966 * 239.99710 * 3 2 1 5 5 H 1.48500 * 109.47490 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47303 * 120.00078 * 3 2 1 7 7 C 1.38705 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00260 * 180.02562 * 7 2 1 9 9 N 1.36785 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.39912 * 119.99436 * 179.97438 * 9 7 2 11 11 C 1.41401 * 126.37712 * 179.97438 * 10 9 7 12 12 C 1.34757 * 107.45286 * 180.02562 * 11 10 9 13 13 N 1.36391 * 108.43990 * 359.97438 * 12 11 10 14 14 H 0.97001 * 125.58825 * 179.97438 * 13 12 11 15 15 C 1.35668 * 126.38481 * 0.28490 * 10 9 7 16 16 H 0.97001 * 119.99616 * 359.97438 * 1 2 3 17 17 H 0.96999 * 120.00670 * 359.97438 * 9 7 2 18 18 H 1.08001 * 126.27303 * 0.02811 * 11 10 9 19 19 H 1.08004 * 125.77803 * 179.97438 * 12 11 10 20 20 H 1.07996 * 125.97567 * 0.03013 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3168 0.0000 0.0000 3 14 2.2508 1.6177 0.0000 4 1 3.1046 1.6962 -1.2125 5 1 1.2859 2.7465 -0.0006 6 1 3.1046 1.6963 1.2125 7 6 2.0103 -1.2012 0.0005 8 1 3.0902 -1.2013 0.0010 9 7 1.3262 -2.3858 0.0005 10 6 2.0258 -3.5974 0.0005 11 6 1.4592 -4.8930 0.0010 12 6 2.4751 -5.7784 0.0014 13 7 3.6504 -5.0865 0.0006 14 1 4.5371 -5.4799 0.0010 15 6 3.3741 -3.7483 0.0060 16 1 -0.4849 0.8401 0.0004 17 1 0.3563 -2.3858 0.0005 18 1 0.4054 -5.1295 0.0011 19 1 2.3754 -6.8538 0.0022 20 1 4.1017 -2.9503 0.0115 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258728560.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:50 Heat of formation + Delta-G solvation = 28.874774 kcal Electronic energy + Delta-G solvation = -7619.418571 eV Core-core repulsion = 6009.131182 eV Total energy + Delta-G solvation = -1610.287388 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.38365 -36.63209 -33.34772 -30.59846 -28.46908 -26.15084 -21.62461 -20.46761 -19.44129 -18.57212 -16.51344 -15.50295 -15.11101 -14.75619 -14.21270 -13.56725 -13.23982 -12.97721 -12.58424 -12.03219 -12.01843 -11.97437 -10.40086 -9.02546 -8.17717 -8.07949 -5.41466 1.44264 1.46392 1.55728 1.73468 2.43857 2.50565 2.90099 3.41665 3.96870 4.58947 4.80024 4.97661 5.35802 5.45936 5.57718 6.02855 6.30728 6.50504 7.10197 7.26130 7.97065 8.09115 9.04454 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.120160 B = 0.015505 C = 0.013799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 232.966113 B = 1805.468548 C = 2028.592615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.058 4.058 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.282 4.282 8 H 0.088 0.912 9 N -0.627 5.627 10 C 0.105 3.895 11 C -0.302 4.302 12 C 0.033 3.967 13 N -0.547 5.547 14 H 0.426 0.574 15 C -0.162 4.162 16 H 0.262 0.738 17 H 0.383 0.617 18 H 0.125 0.875 19 H 0.204 0.796 20 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -7.658 0.012 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.252 4.252 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.413 4.413 8 H 0.106 0.894 9 N -0.246 5.246 10 C -0.005 4.005 11 C -0.333 4.333 12 C -0.102 4.102 13 N -0.147 5.147 14 H 0.264 0.736 15 C -0.295 4.295 16 H 0.071 0.929 17 H 0.215 0.785 18 H 0.143 0.857 19 H 0.221 0.779 20 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.796 -7.371 0.008 10.026 hybrid contribution -0.060 0.933 0.000 0.935 sum 6.736 -6.438 0.008 9.318 Atomic orbital electron populations 1.69854 1.07044 1.27589 1.55904 1.25927 0.96590 1.02222 1.00468 0.84954 0.77267 0.77230 0.78723 1.19650 1.21245 1.19634 1.19695 0.92293 0.84286 1.45011 0.89392 1.39957 1.06149 1.00908 1.77558 1.17934 0.92482 0.87139 1.02917 1.20699 0.99256 0.91289 1.22008 1.22042 0.83692 0.98338 1.06152 1.41316 1.08271 1.04654 1.60419 0.73552 1.20688 0.94821 0.86069 1.27951 0.92881 0.78505 0.85659 0.77889 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.67 13.06 21.64 0.28 -58.39 14 2 C -0.06 -3.35 5.50 84.83 0.47 -2.89 14 3 Si 0.99 45.53 29.55 68.60 2.03 47.56 14 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 14 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 14 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 14 7 C -0.28 -16.44 9.69 84.03 0.81 -15.63 14 8 H 0.09 4.87 6.48 -2.92 -0.02 4.86 14 9 N -0.63 -35.57 5.48 -184.63 -1.01 -36.58 14 10 C 0.11 5.17 6.99 38.03 0.27 5.43 14 11 C -0.30 -12.34 10.87 22.25 0.24 -12.10 14 12 C 0.03 1.02 11.92 83.19 0.99 2.01 14 13 N -0.55 -17.20 6.08 -193.77 -1.18 -18.38 14 14 H 0.43 9.37 8.96 -92.71 -0.83 8.54 14 15 C -0.16 -6.92 11.20 83.35 0.93 -5.99 14 16 H 0.26 15.29 8.31 -92.71 -0.77 14.51 14 17 H 0.38 22.68 8.01 -92.71 -0.74 21.93 14 18 H 0.13 4.87 8.06 -2.91 -0.02 4.84 14 19 H 0.20 4.05 8.06 -2.91 -0.02 4.03 14 20 H 0.14 6.11 7.05 -2.91 -0.02 6.09 14 Total: -1.00 -68.35 186.60 3.52 -64.83 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.31 Total: 30.12 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.71 Total: -29.16 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -1.91 Total: -113.35 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.35 3.52 -64.83 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258728560.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.703 kcal (2) G-P(sol) polarization free energy of solvation -68.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds