Wall clock time and date at job start Mon Mar 30 2020 01:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31701 * 1 3 3 Si 1.86795 * 120.00120 * 2 1 4 4 H 1.48501 * 109.46781 * 270.27000 * 3 2 1 5 5 H 1.48495 * 109.47449 * 30.27109 * 3 2 1 6 6 H 1.48498 * 109.47513 * 150.27438 * 3 2 1 7 7 C 1.38625 * 119.99810 * 180.26834 * 2 1 3 8 8 H 1.07999 * 119.99961 * 179.72925 * 7 2 1 9 9 N 1.36848 * 119.99989 * 359.72680 * 7 2 1 10 10 C 1.38605 * 119.99977 * 179.97438 * 9 7 2 11 11 C 1.36066 * 126.00149 * 359.68956 * 10 9 7 12 12 C 1.40622 * 107.39399 * 179.90961 * 11 10 9 13 13 C 1.35018 * 107.61008 * 0.35981 * 12 11 10 14 14 N 1.36753 * 126.00033 * 180.02562 * 10 9 7 15 15 H 0.97002 * 125.68751 * 359.93703 * 14 10 9 16 16 H 0.97000 * 119.99485 * 359.73287 * 1 2 3 17 17 H 0.96999 * 120.00056 * 0.02562 * 9 7 2 18 18 H 1.08000 * 126.29597 * 0.03564 * 11 10 9 19 19 H 1.08004 * 126.19558 * 180.12315 * 12 11 10 20 20 H 1.08002 * 125.81364 * 179.75183 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3170 0.0000 0.0000 3 14 2.2510 1.6177 0.0000 4 1 2.4928 2.0496 -1.4001 5 1 1.4515 2.6510 0.7057 6 1 3.5515 1.4385 0.6942 7 6 2.0101 -1.2005 -0.0056 8 1 3.0901 -1.2005 -0.0100 9 7 1.3258 -2.3857 -0.0055 10 6 2.0188 -3.5860 -0.0117 11 6 3.3720 -3.7283 -0.0241 12 6 3.6497 -5.1068 -0.0243 13 6 2.4689 -5.7614 -0.0202 14 7 1.4626 -4.8353 -0.0128 15 1 0.5127 -5.0318 -0.0086 16 1 -0.4849 0.8401 0.0039 17 1 0.3558 -2.3856 -0.0019 18 1 4.0987 -2.9295 -0.0304 19 1 4.6301 -5.5599 -0.0308 20 1 2.3408 -6.8338 -0.0230 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258915767.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:24 Heat of formation + Delta-G solvation = 29.705198 kcal Electronic energy + Delta-G solvation = -7643.958159 eV Core-core repulsion = 6033.706781 eV Total energy + Delta-G solvation = -1610.251379 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.47712 -36.71525 -33.27521 -31.50850 -28.19688 -26.06165 -21.44864 -21.14955 -19.28560 -18.83918 -16.45669 -15.78499 -15.13206 -15.03031 -14.14813 -13.28727 -13.18155 -13.00065 -12.66429 -12.13676 -12.03335 -11.95286 -10.35980 -9.49996 -8.31672 -8.01972 -5.59157 1.42482 1.44319 1.57015 1.87111 2.27559 2.45474 2.66917 3.27830 3.77257 4.71034 4.84238 5.05471 5.35428 5.57565 5.67868 5.91235 6.28168 6.49853 6.99862 7.04570 7.76154 7.84869 8.89358 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.121111 B = 0.015682 C = 0.013952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 231.137382 B = 1785.074877 C = 2006.368342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.043 4.043 3 Si 0.997 3.003 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.288 4.288 8 H 0.090 0.910 9 N -0.610 5.610 10 C 0.299 3.701 11 C -0.347 4.347 12 C -0.179 4.179 13 C -0.066 4.066 14 N -0.590 5.590 15 H 0.415 0.585 16 H 0.267 0.733 17 H 0.387 0.613 18 H 0.103 0.897 19 H 0.144 0.856 20 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 -6.002 0.004 6.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.239 4.239 3 Si 0.821 3.179 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.418 4.418 8 H 0.108 0.892 9 N -0.231 5.231 10 C 0.082 3.918 11 C -0.377 4.377 12 C -0.205 4.205 13 C -0.191 4.191 14 N -0.199 5.199 15 H 0.252 0.748 16 H 0.076 0.924 17 H 0.220 0.780 18 H 0.121 0.879 19 H 0.162 0.838 20 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.526 -5.762 0.008 6.292 hybrid contribution -0.644 0.896 -0.005 1.104 sum 1.882 -4.866 0.003 5.217 Atomic orbital electron populations 1.69836 1.06917 1.28173 1.54499 1.25938 0.96658 1.02216 0.99076 0.84835 0.77790 0.77009 0.78231 1.20189 1.20755 1.18972 1.19616 0.92478 0.83014 1.46680 0.89196 1.39685 1.06629 1.00372 1.76447 1.17943 0.91149 0.80336 1.02389 1.20034 0.92099 0.97175 1.28394 1.20764 0.98203 0.92394 1.09094 1.21849 0.86121 0.94834 1.16280 1.41655 1.08963 1.03662 1.65639 0.74831 0.92362 0.78046 0.87905 0.83817 0.78849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.86 13.06 21.62 0.28 -54.58 14 2 C -0.04 -2.39 5.50 84.80 0.47 -1.93 14 3 Si 1.00 44.05 29.55 68.60 2.03 46.08 14 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 14 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 14 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 14 7 C -0.29 -16.24 9.67 84.00 0.81 -15.43 14 8 H 0.09 5.02 6.42 -2.91 -0.02 5.00 14 9 N -0.61 -32.52 5.43 -188.94 -1.03 -33.55 14 10 C 0.30 14.26 8.04 131.13 1.05 15.32 14 11 C -0.35 -16.33 10.07 22.35 0.23 -16.11 14 12 C -0.18 -6.85 10.84 22.11 0.24 -6.61 14 13 C -0.07 -2.20 11.94 83.18 0.99 -1.20 14 14 N -0.59 -22.19 6.12 -191.70 -1.17 -23.36 14 15 H 0.41 12.92 8.96 -92.71 -0.83 12.09 14 16 H 0.27 14.64 8.31 -92.71 -0.77 13.87 14 17 H 0.39 20.70 8.01 -92.71 -0.74 19.96 14 18 H 0.10 5.04 7.01 -2.91 -0.02 5.02 14 19 H 0.14 4.57 8.06 -2.91 -0.02 4.55 14 20 H 0.19 4.55 8.06 -2.91 -0.02 4.52 14 Total: -1.00 -63.17 186.37 3.59 -59.57 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.31 Total: 31.79 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 3.79 Total: -25.96 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -1.92 Total: -111.49 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -63.17 3.59 -59.57 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915767.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.279 kcal (2) G-P(sol) polarization free energy of solvation -63.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds