Wall clock time and date at job start Mon Mar 30 2020 02:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53778 * 113.61727 * 274.13766 * 11 10 9 13 13 C 1.53956 * 87.02468 * 220.04570 * 12 11 10 14 14 C 1.53784 * 113.61658 * 176.52792 * 11 10 9 15 15 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 16 16 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 17 17 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 18 18 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 19 19 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 20 20 H 1.09000 * 112.84915 * 45.33452 * 11 10 9 21 21 H 1.08996 * 113.61184 * 334.56845 * 12 11 10 22 22 H 1.09000 * 113.61578 * 105.46835 * 12 11 10 23 23 H 1.09002 * 113.53647 * 270.81670 * 13 12 11 24 24 H 1.08996 * 113.66740 * 139.92974 * 13 12 11 25 25 H 1.08998 * 113.61407 * 254.52625 * 14 11 10 26 26 H 1.08996 * 113.61156 * 25.35491 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 1.0845 -5.4694 1.4068 13 6 1.4497 -6.8887 0.9351 14 6 2.3901 -6.2239 -0.0841 15 1 -0.4850 0.8401 0.0004 16 1 0.6239 -2.5567 0.8903 17 1 0.6246 -2.5571 -0.8897 18 1 2.8718 -3.6044 -0.8895 19 1 2.8718 -3.6044 0.8904 20 1 0.6568 -5.0008 -0.7129 21 1 1.7334 -5.0914 2.1967 22 1 0.0254 -5.3416 1.6302 23 1 0.6171 -7.4229 0.4772 24 1 1.9701 -7.4798 1.6886 25 1 2.3833 -6.7043 -1.0625 26 1 3.3970 -6.0521 0.2963 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259044100.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:54 Heat of formation + Delta-G solvation = -26.720064 kcal Electronic energy + Delta-G solvation = -8126.646644 eV Core-core repulsion = 6590.177347 eV Total energy + Delta-G solvation = -1536.469297 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.70467 -35.52203 -32.82789 -28.09923 -26.41352 -24.72935 -22.05929 -20.21659 -18.43661 -16.61645 -16.31203 -15.47159 -15.07094 -14.31078 -13.71144 -13.24908 -13.13513 -12.82980 -12.63214 -12.38006 -11.90291 -11.66338 -11.41975 -11.24569 -10.88509 -10.55909 -10.53752 -8.20184 -6.32368 1.38695 1.42569 1.50594 2.40700 3.11972 3.83422 3.88143 3.95474 4.07813 4.61915 4.77297 4.88010 4.92562 4.94443 5.06484 5.13235 5.19974 5.25187 5.49635 5.52697 5.68073 5.81943 5.86632 6.26033 6.85273 7.37025 8.91425 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.129686 B = 0.011438 C = 0.010979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 215.854185 B = 2447.289617 C = 2549.696570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.090 4.090 11 C -0.121 4.121 12 C -0.142 4.142 13 C -0.127 4.127 14 C -0.130 4.130 15 H 0.264 0.736 16 H -0.011 1.011 17 H -0.014 1.014 18 H 0.047 0.953 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -9.389 1.093 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.140 4.140 12 C -0.179 4.179 13 C -0.164 4.164 14 C -0.168 4.168 15 H 0.073 0.927 16 H 0.008 0.992 17 H 0.004 0.996 18 H 0.065 0.935 19 H 0.067 0.933 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.073 0.927 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.871 -9.286 1.093 10.120 hybrid contribution -0.027 1.149 -0.050 1.150 sum 3.844 -8.137 1.043 9.060 Atomic orbital electron populations 1.70103 1.07904 1.27859 1.51672 1.26040 0.95816 1.03529 0.94630 0.85466 0.78266 0.77857 0.79248 1.19096 1.20657 1.19073 1.21756 0.93555 0.92696 1.50676 0.92307 1.18980 0.94478 0.93229 0.94389 1.21439 0.97596 0.93758 0.99983 1.22629 0.98891 0.94352 0.98091 1.23001 1.00764 0.97599 0.96583 1.22795 0.99579 0.95198 0.98837 1.22922 0.98205 0.95577 1.00060 0.92743 0.99214 0.99591 0.93466 0.93252 0.90904 0.90718 0.92660 0.89484 0.90087 0.90815 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.29 21.45 0.28 -58.49 15 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 15 3 Si 0.97 45.34 29.54 68.60 2.03 47.37 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 15 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 7 C -0.55 -32.69 9.11 25.60 0.23 -32.45 15 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 15 9 C 0.03 1.46 4.97 29.85 0.15 1.61 15 10 C -0.09 -3.93 4.98 30.59 0.15 -3.78 15 11 C -0.12 -4.31 3.64 -10.27 -0.04 -4.35 15 12 C -0.14 -4.51 7.65 31.18 0.24 -4.27 15 13 C -0.13 -3.09 8.09 31.18 0.25 -2.84 15 14 C -0.13 -3.53 7.65 31.12 0.24 -3.30 15 15 H 0.26 15.51 8.31 -92.71 -0.77 14.74 15 16 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 15 17 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 15 18 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 19 H 0.05 2.10 7.87 -2.39 -0.02 2.08 15 20 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 21 H 0.07 2.40 7.92 -2.39 -0.02 2.38 15 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 26 H 0.08 2.15 8.10 -2.39 -0.02 2.13 15 Total: -1.00 -64.96 220.75 5.11 -59.85 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: 1.12 Total: 0.36 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 1.69 Total: -49.08 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.28 Total: -58.49 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.96 5.11 -59.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259044100.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.131 kcal (2) G-P(sol) polarization free energy of solvation -64.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds