Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47444 * 300.00101 * 3 2 1 6 6 H 1.48503 * 109.47377 * 60.00341 * 3 2 1 7 7 C 1.37870 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00556 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47272 * 179.97438 * 9 7 2 11 11 N 1.33251 * 125.52599 * 90.00181 * 10 9 7 12 12 C 1.30825 * 109.82850 * 179.97438 * 11 10 9 13 13 N 1.34434 * 108.08133 * 359.97438 * 12 11 10 14 14 H 0.96991 * 126.82624 * 179.73840 * 13 12 11 15 15 N 1.30709 * 125.53091 * 269.99942 * 10 9 7 16 16 H 0.97004 * 120.00169 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.46924 * 59.99826 * 9 7 2 18 18 H 1.09001 * 109.47302 * 300.00304 * 9 7 2 19 19 H 1.08001 * 125.96388 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 7 2.7344 -4.2335 1.0820 12 6 3.5522 -5.1909 0.7270 13 7 3.5868 -5.2334 -0.6162 14 1 4.1085 -5.8392 -1.1655 15 7 2.7233 -4.2213 -1.0662 16 1 -0.4850 0.8401 0.0004 17 1 0.6241 -2.5566 -0.8903 18 1 0.6248 -2.5571 0.8896 19 1 4.1034 -5.8349 1.3962 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259316783.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = 75.846822 kcal Electronic energy + Delta-G solvation = -7673.023568 eV Core-core repulsion = 5999.347130 eV Total energy + Delta-G solvation = -1673.676439 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -41.26989 -33.51171 -31.84987 -30.70391 -27.93239 -23.52129 -21.97481 -19.35799 -17.66921 -16.34025 -14.61387 -14.52676 -14.36077 -12.52299 -12.08735 -11.43011 -11.27299 -10.76284 -10.65716 -9.96171 -9.65221 -9.28903 -9.24332 -8.63084 -8.38828 -6.01445 -4.03294 2.32589 3.33770 3.34615 3.40905 3.46597 3.80928 4.49949 4.89706 5.34252 5.64332 5.79803 7.03678 7.27482 7.44567 7.57510 7.72476 7.94269 8.30032 8.94651 8.97676 9.58810 11.09778 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.107823 B = 0.014976 C = 0.014307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.623150 B = 1869.200614 C = 1956.594480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.100 3.900 10 C 0.270 3.730 11 N -0.542 5.542 12 C 0.237 3.763 13 N -0.506 5.506 14 H 0.430 0.570 15 N -0.334 5.334 16 H 0.263 0.737 17 H 0.043 0.957 18 H 0.049 0.951 19 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 -7.765 0.266 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.061 3.939 10 C -0.011 4.011 11 N -0.270 5.270 12 C -0.063 4.063 13 N -0.223 5.223 14 H 0.274 0.726 15 N -0.162 5.162 16 H 0.072 0.928 17 H 0.062 0.938 18 H 0.067 0.933 19 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.727 -7.305 -0.095 9.283 hybrid contribution 1.070 0.247 -0.184 1.113 sum 6.797 -7.058 -0.279 9.803 Atomic orbital electron populations 1.69956 1.05965 1.26843 1.50527 1.24947 0.94933 0.99238 0.95120 0.86392 0.79975 0.83196 0.77591 1.19824 1.20904 1.20833 1.20910 0.93004 0.89549 1.51035 0.92606 1.17822 0.90619 0.86008 0.99466 1.25477 0.96062 0.95761 0.83823 1.70499 1.14121 1.09957 1.32422 1.25983 0.97902 0.97684 0.84709 1.48168 1.37740 1.29663 1.06758 0.72626 1.78085 1.10944 1.04160 1.23018 0.92778 0.93840 0.93306 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 13 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 13 3 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 13 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 13 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 13 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 13 7 C -0.51 -14.94 9.09 -34.44 -0.31 -15.25 13 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 13 9 C 0.10 2.78 5.60 -29.04 -0.16 2.62 13 10 C 0.27 6.66 7.33 -156.85 -1.15 5.51 13 11 N -0.54 -11.95 11.19 -11.98 -0.13 -12.08 13 12 C 0.24 3.78 13.13 -90.65 -1.19 2.59 13 13 N -0.51 -8.17 7.45 29.53 0.22 -7.95 13 14 H 0.43 4.79 8.96 -182.34 -1.63 3.15 13 15 N -0.33 -7.51 12.80 32.42 0.41 -7.10 13 16 H 0.26 7.38 8.31 -40.82 -0.34 7.04 13 17 H 0.04 1.24 8.14 -51.93 -0.42 0.82 13 18 H 0.05 1.40 8.14 -51.93 -0.42 0.98 13 19 H 0.21 2.00 8.06 -52.49 -0.42 1.58 13 LS Contribution 185.54 15.07 2.80 2.80 Total: -1.00 -34.17 185.54 -6.34 -40.51 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -2.44 Total: -4.28 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.91 Total: -2.91 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 1.24 Total: -53.27 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 2.80 Total: 2.80 kcal Total: -34.17 -6.34 -40.51 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259316783.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.358 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds