Wall clock time and date at job start Mon Mar 30 2020 01:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47444 * 300.00101 * 3 2 1 6 6 H 1.48503 * 109.47377 * 60.00341 * 3 2 1 7 7 C 1.37870 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00556 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47272 * 179.97438 * 9 7 2 11 11 N 1.33251 * 125.52599 * 90.00181 * 10 9 7 12 12 C 1.30825 * 109.82850 * 179.97438 * 11 10 9 13 13 N 1.34434 * 108.08133 * 359.97438 * 12 11 10 14 14 H 0.96991 * 126.82624 * 179.73840 * 13 12 11 15 15 N 1.30709 * 125.53091 * 269.99942 * 10 9 7 16 16 H 0.97004 * 120.00169 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.46924 * 59.99826 * 9 7 2 18 18 H 1.09001 * 109.47302 * 300.00304 * 9 7 2 19 19 H 1.08001 * 125.96388 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 7 2.7344 -4.2335 1.0820 12 6 3.5522 -5.1909 0.7270 13 7 3.5868 -5.2334 -0.6162 14 1 4.1085 -5.8392 -1.1655 15 7 2.7233 -4.2213 -1.0662 16 1 -0.4850 0.8401 0.0004 17 1 0.6241 -2.5566 -0.8903 18 1 0.6248 -2.5571 0.8896 19 1 4.1034 -5.8349 1.3962 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259316783.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:45 Heat of formation + Delta-G solvation = 51.240808 kcal Electronic energy + Delta-G solvation = -7674.090565 eV Core-core repulsion = 5999.347130 eV Total energy + Delta-G solvation = -1674.743435 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -42.82924 -35.60106 -33.61156 -32.38965 -29.93553 -25.65451 -23.42712 -21.11409 -19.09824 -18.57995 -16.60276 -16.13842 -15.89614 -14.48226 -14.18891 -13.47577 -12.90789 -12.73714 -12.61437 -12.00523 -11.71175 -10.90641 -10.87940 -10.61128 -10.37907 -8.23431 -6.35275 0.85571 1.41053 1.42519 1.55654 2.04744 2.12600 2.44769 3.09120 3.57197 4.01634 4.43244 5.19297 5.29583 5.48929 5.59068 5.68376 6.09139 6.48922 6.70917 7.31801 7.36875 8.88579 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.107823 B = 0.014976 C = 0.014307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.623150 B = 1869.200614 C = 1956.594480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.046 0.954 9 C 0.109 3.891 10 C 0.245 3.755 11 N -0.588 5.588 12 C 0.268 3.732 13 N -0.483 5.483 14 H 0.456 0.544 15 N -0.362 5.362 16 H 0.269 0.731 17 H 0.019 0.981 18 H 0.024 0.976 19 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 -8.257 0.541 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.065 0.935 9 C 0.069 3.931 10 C -0.036 4.036 11 N -0.318 5.318 12 C -0.030 4.030 13 N -0.203 5.203 14 H 0.304 0.696 15 N -0.192 5.192 16 H 0.078 0.922 17 H 0.037 0.963 18 H 0.043 0.957 19 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 7.567 -7.841 0.158 10.897 hybrid contribution 0.555 0.246 -0.271 0.665 sum 8.122 -7.595 -0.113 11.120 Atomic orbital electron populations 1.70064 1.07544 1.28269 1.50646 1.25900 0.95913 1.03103 0.94175 0.85264 0.78461 0.78179 0.78267 1.19466 1.19732 1.19604 1.21117 0.92675 0.90941 1.51978 0.93519 1.17411 0.91038 0.87590 0.97060 1.24754 0.97120 0.96268 0.85507 1.70379 1.16537 1.12366 1.32498 1.27135 0.95228 0.95672 0.84915 1.47975 1.36437 1.28353 1.07551 0.69585 1.77903 1.12283 1.05814 1.23211 0.92177 0.96260 0.95731 0.70426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.44 0.28 -56.39 13 2 C 0.01 0.46 5.46 84.65 0.46 0.92 13 3 Si 0.97 45.54 29.54 68.60 2.03 47.56 13 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 13 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 13 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 13 7 C -0.53 -32.00 9.09 25.60 0.23 -31.77 13 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 13 9 C 0.11 6.30 5.60 29.10 0.16 6.46 13 10 C 0.25 12.25 7.33 138.63 1.02 13.27 13 11 N -0.59 -25.31 11.19 -191.80 -2.15 -27.45 13 12 C 0.27 7.56 13.13 180.36 2.37 9.92 13 13 N -0.48 -14.15 7.45 -60.49 -0.45 -14.60 13 14 H 0.46 8.36 8.96 -213.11 -1.91 6.45 13 15 N -0.36 -16.11 12.80 -51.33 -0.66 -16.76 13 16 H 0.27 15.24 8.31 -92.70 -0.77 14.47 13 17 H 0.02 1.17 8.14 -2.39 -0.02 1.15 13 18 H 0.02 1.49 8.14 -2.39 -0.02 1.47 13 19 H 0.28 3.51 8.06 -2.91 -0.02 3.48 13 Total: -1.00 -76.17 185.54 2.65 -73.52 By element: Atomic # 1 Polarization: -4.03 SS G_CDS: -0.64 Total: -4.68 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.24 Total: -1.19 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -2.97 Total: -115.21 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -76.17 2.65 -73.52 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259316783.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.761 kcal (2) G-P(sol) polarization free energy of solvation -76.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds