Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86796 * 120.00231 * 2 1 4 4 H 1.48504 * 109.47083 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47294 * 119.99579 * 3 2 1 6 6 H 1.48502 * 109.47029 * 239.99848 * 3 2 1 7 7 C 1.40166 * 119.99674 * 179.72163 * 2 1 3 8 8 H 1.07997 * 120.00072 * 3.55223 * 7 2 1 9 9 C 1.39803 * 119.99660 * 183.55919 * 7 2 1 10 10 N 1.33069 * 125.74828 * 5.93863 * 9 7 2 11 11 C 1.33049 * 109.31854 * 179.83173 * 10 9 7 12 12 N 1.39589 * 125.88491 * 180.20934 * 11 10 9 13 13 C 1.38271 * 108.23418 * 0.43245 * 11 10 9 14 14 N 1.36579 * 106.89400 * 359.73917 * 13 11 10 15 15 H 0.96997 * 126.47512 * 179.97438 * 14 13 11 16 16 H 0.96997 * 119.99870 * 174.79682 * 1 2 3 17 17 H 0.96995 * 120.00241 * 180.26537 * 12 11 10 18 18 H 0.97002 * 119.99770 * 0.26089 * 12 11 10 19 19 H 1.07996 * 126.55033 * 179.75572 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7464 -0.0006 5 1 3.0951 1.6964 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0081 -1.2139 0.0059 8 1 1.4697 -2.1485 -0.0475 9 6 3.4041 -1.2147 0.0811 10 7 4.1735 -0.1443 0.2625 11 6 5.4500 -0.5186 0.2861 12 7 6.5474 0.3262 0.4611 13 6 5.5028 -1.8880 0.1024 14 7 4.2139 -2.3212 -0.0261 15 1 3.9244 -3.2362 -0.1667 16 1 -0.4850 -0.8366 -0.0762 17 1 7.4458 -0.0392 0.4603 18 1 6.4114 1.2788 0.5835 19 1 6.3930 -2.4985 0.0675 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259561484.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = 13.036778 kcal Electronic energy + Delta-G solvation = -7932.437455 eV Core-core repulsion = 6256.037368 eV Total energy + Delta-G solvation = -1676.400086 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.84039 -35.74317 -34.86214 -32.27164 -30.05122 -26.01702 -22.10499 -21.60903 -19.87267 -18.39930 -16.84862 -16.02351 -15.49005 -15.36851 -14.79959 -14.08058 -13.68405 -12.76998 -12.30717 -11.79488 -11.61578 -11.02462 -10.04810 -9.84767 -9.29398 -8.30706 -6.47388 1.36954 1.65125 1.91491 2.10559 2.52307 2.61328 2.85967 3.34008 3.40199 4.55086 4.93008 5.28613 5.51472 5.80763 5.96068 6.15998 6.66846 7.01747 7.11942 7.38268 7.94304 8.14433 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.074106 B = 0.026601 C = 0.019768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.745145 B = 1052.333190 C = 1416.092164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.030 3.970 3 Si 1.176 2.824 4 H -0.321 1.321 5 H -0.279 1.279 6 H -0.297 1.297 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.365 3.635 10 N -0.641 5.641 11 C 0.274 3.726 12 N -0.852 5.852 13 C -0.225 4.225 14 N -0.601 5.601 15 H 0.416 0.584 16 H 0.278 0.722 17 H 0.412 0.588 18 H 0.396 0.604 19 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.979 -1.139 0.017 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.185 4.185 3 Si 1.007 2.993 4 H -0.253 1.253 5 H -0.206 1.206 6 H -0.225 1.225 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.117 3.883 10 N -0.377 5.377 11 C 0.047 3.953 12 N -0.402 5.402 13 C -0.357 4.357 14 N -0.211 5.211 15 H 0.254 0.746 16 H 0.089 0.911 17 H 0.243 0.757 18 H 0.224 0.776 19 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.496 1.115 0.171 8.571 hybrid contribution 0.311 -3.070 -0.196 3.092 sum 8.807 -1.956 -0.026 9.021 Atomic orbital electron populations 1.70671 1.08013 1.32233 1.36679 1.27981 0.95511 1.06654 0.88383 0.81696 0.70065 0.68575 0.78936 1.25260 1.20613 1.22455 1.19372 0.88531 0.96437 1.53117 0.91228 1.19917 0.92135 0.81276 0.94930 1.69168 1.02078 1.28191 1.38265 1.18319 0.87253 0.89087 1.00679 1.40955 1.03971 1.08233 1.87085 1.21927 0.87928 0.94127 1.31671 1.42692 1.05871 1.09470 1.63091 0.74639 0.91139 0.75712 0.77617 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.74 13.65 21.87 0.30 -48.45 13 2 C 0.03 1.74 5.52 85.32 0.47 2.21 13 3 Si 1.18 60.15 25.83 68.60 1.77 61.93 13 4 H -0.32 -15.80 7.11 99.48 0.71 -15.10 13 5 H -0.28 -14.43 6.77 99.48 0.67 -13.75 13 6 H -0.30 -15.36 7.11 99.48 0.71 -14.65 13 7 C -0.53 -30.26 9.89 23.12 0.23 -30.03 13 8 H 0.07 3.91 8.05 -2.91 -0.02 3.89 13 9 C 0.36 19.47 7.34 133.52 0.98 20.45 13 10 N -0.64 -33.85 6.37 -190.48 -1.21 -35.06 13 11 C 0.27 12.26 8.33 132.46 1.10 13.36 13 12 N -0.85 -28.78 9.13 -55.24 -0.50 -29.28 13 13 C -0.22 -9.18 12.16 83.96 1.02 -8.16 13 14 N -0.60 -26.64 6.25 -190.03 -1.19 -27.83 13 15 H 0.42 15.58 8.96 -92.71 -0.83 14.74 13 16 H 0.28 15.38 8.72 -92.71 -0.81 14.57 13 17 H 0.41 10.50 8.96 -92.71 -0.83 9.67 13 18 H 0.40 12.74 8.96 -92.71 -0.83 11.91 13 19 H 0.18 5.80 8.06 -2.91 -0.02 5.77 13 Total: -1.00 -65.52 177.17 1.71 -63.81 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -1.26 Total: 17.06 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 3.81 Total: -2.18 kcal Atomic # 7 Polarization: -138.01 SS G_CDS: -2.61 Total: -140.62 kcal Atomic # 14 Polarization: 60.15 SS G_CDS: 1.77 Total: 61.93 kcal Total: -65.52 1.71 -63.81 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259561484.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.847 kcal (2) G-P(sol) polarization free energy of solvation -65.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds