Wall clock time and date at job start Mon Mar 30 2020 02:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48497 * 109.47060 * 239.99766 * 3 2 1 5 5 H 1.48497 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47098 * 120.00019 * 3 2 1 7 7 C 1.40378 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.39345 * 120.00220 * 0.02562 * 7 2 1 10 10 O 1.35293 * 126.52527 * 0.02562 * 9 7 2 11 11 N 1.41456 * 108.07638 * 179.75826 * 10 9 7 12 12 C 1.30357 * 109.13496 * 0.41953 * 11 10 9 13 13 C 1.40373 * 126.52990 * 180.02562 * 9 7 2 14 14 N 1.38750 * 126.36803 * 359.97438 * 13 9 7 15 15 H 0.97005 * 119.99573 * 0.02562 * 1 2 3 16 16 H 1.08002 * 125.71209 * 179.85434 * 12 11 10 17 17 H 0.97004 * 119.99755 * 180.02562 * 14 13 9 18 18 H 0.96999 * 120.00676 * 0.02768 * 14 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6964 -1.2124 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0086 -1.2157 0.0005 8 1 3.0886 -1.2157 0.0010 9 6 1.3119 -2.4225 0.0005 10 8 -0.0322 -2.5763 -0.0004 11 7 -0.3154 -3.9622 -0.0057 12 6 0.8056 -4.6274 0.0012 13 6 1.8711 -3.7101 0.0016 14 7 3.2236 -4.0197 0.0022 15 1 -0.4850 0.8401 -0.0004 16 1 0.9002 -5.7033 0.0016 17 1 3.5088 -4.9469 0.0025 18 1 3.8839 -3.3092 0.0024 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259666058.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:37 Heat of formation + Delta-G solvation = 5.962055 kcal Electronic energy + Delta-G solvation = -8002.832558 eV Core-core repulsion = 6228.407027 eV Total energy + Delta-G solvation = -1774.425532 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.29152 -35.78190 -35.21174 -32.68397 -30.21530 -26.71694 -22.95163 -21.44446 -19.43769 -17.34674 -17.07595 -16.18882 -15.80411 -15.50020 -14.15769 -13.73265 -12.98066 -12.97811 -12.67766 -11.90386 -11.84088 -11.53676 -11.44057 -10.64556 -8.83103 -8.53711 -6.26370 0.99456 1.40153 1.57241 1.59766 2.16060 2.25748 2.89414 3.18069 3.73694 4.43432 4.71974 5.04092 5.09814 5.74795 6.06774 6.42653 6.50649 7.29592 7.37063 7.74267 8.18207 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.085615 B = 0.021248 C = 0.017126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.968849 B = 1317.442737 C = 1634.569453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.017 3.983 3 Si 1.014 2.986 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.444 4.444 8 H 0.121 0.879 9 C 0.151 3.849 10 O -0.114 6.114 11 N -0.479 5.479 12 C 0.041 3.959 13 C -0.151 4.151 14 N -0.866 5.866 15 H 0.298 0.702 16 H 0.197 0.803 17 H 0.394 0.606 18 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 1.572 0.015 7.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.203 4.203 3 Si 0.831 3.169 4 H -0.173 1.173 5 H -0.192 1.192 6 H -0.173 1.173 7 C -0.476 4.476 8 H 0.139 0.861 9 C 0.087 3.913 10 O -0.117 6.117 11 N -0.242 5.242 12 C -0.138 4.138 13 C -0.258 4.258 14 N -0.419 5.419 15 H 0.109 0.891 16 H 0.214 0.786 17 H 0.222 0.778 18 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.395 1.614 0.007 5.631 hybrid contribution 1.092 0.241 0.005 1.118 sum 6.487 1.856 0.013 6.747 Atomic orbital electron populations 1.69835 1.09907 1.32137 1.30949 1.27448 0.95789 1.06175 0.90858 0.84775 0.78225 0.73053 0.80812 1.17340 1.19209 1.17325 1.19228 0.95697 0.88091 1.44542 0.86142 1.20416 0.82862 0.94705 0.93358 1.89297 1.21281 1.21137 1.80032 1.79760 1.20643 0.85213 1.38579 1.24090 0.90472 1.00605 0.98615 1.18738 0.87846 0.89615 1.29590 1.40255 1.00422 1.08439 1.92762 0.89069 0.78616 0.77755 0.78295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.57 12.02 21.91 0.26 -43.31 13 2 C 0.02 0.84 5.50 85.39 0.47 1.31 13 3 Si 1.01 35.64 29.56 68.60 2.03 37.66 13 4 H -0.25 -8.27 7.11 99.48 0.71 -7.56 13 5 H -0.27 -9.02 7.11 99.48 0.71 -8.32 13 6 H -0.25 -8.26 7.11 99.48 0.71 -7.55 13 7 C -0.44 -23.32 9.19 23.06 0.21 -23.10 13 8 H 0.12 5.58 7.31 -2.91 -0.02 5.56 13 9 C 0.15 8.68 6.90 23.06 0.16 8.84 13 10 O -0.11 -7.22 10.48 24.72 0.26 -6.96 13 11 N -0.48 -27.58 12.88 -56.79 -0.73 -28.31 13 12 C 0.04 1.99 12.02 85.49 1.03 3.02 13 13 C -0.15 -7.57 7.34 39.14 0.29 -7.28 13 14 N -0.87 -33.73 9.08 -49.98 -0.45 -34.18 13 15 H 0.30 14.38 8.29 -92.70 -0.77 13.61 13 16 H 0.20 7.53 8.06 -2.91 -0.02 7.51 13 17 H 0.39 12.51 8.95 -92.71 -0.83 11.68 13 18 H 0.39 14.16 8.26 -92.71 -0.77 13.40 13 Total: -1.00 -67.23 177.16 3.23 -63.99 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.29 Total: 28.32 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 2.16 Total: -17.21 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -0.92 Total: -105.80 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.26 Total: -6.96 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.66 kcal Total: -67.23 3.23 -63.99 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666058.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.955 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds