Wall clock time and date at job start Mon Mar 30 2020 01:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34952 * 125.48330 * 2 1 4 4 N 1.36661 * 106.72361 * 180.15993 * 3 2 1 5 5 C 1.37571 * 126.88369 * 179.84614 * 4 3 2 6 6 H 1.08002 * 120.00318 * 359.71697 * 5 4 3 7 7 C 1.39014 * 119.99843 * 179.43498 * 5 4 3 8 8 N 1.31254 * 120.00065 * 0.27738 * 7 5 4 9 9 Si 1.86803 * 119.99906 * 180.27880 * 7 5 4 10 10 H 1.48496 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47141 * 119.99945 * 9 7 5 12 12 H 1.48498 * 109.47018 * 239.99992 * 9 7 5 13 13 N 1.40325 * 106.23023 * 359.58856 * 4 3 2 14 14 N 1.28754 * 108.03107 * 0.25843 * 13 4 3 15 15 H 1.09000 * 109.46954 * 270.28608 * 1 2 3 16 16 H 1.08998 * 109.47407 * 30.28652 * 1 2 3 17 17 H 1.09001 * 109.46906 * 150.28720 * 1 2 3 18 18 H 1.07997 * 126.63660 * 0.02675 * 3 2 1 19 19 H 0.97005 * 119.99937 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2904 1.0989 0.0000 4 7 3.5844 0.6594 -0.0037 5 6 4.7201 1.4358 -0.0079 6 1 4.6381 2.5127 -0.0133 7 6 5.9733 0.8342 0.0006 8 7 6.0730 -0.4745 0.0072 9 14 7.5154 1.8884 0.0026 10 1 7.1340 3.3235 -0.0064 11 1 8.3136 1.5956 1.2201 12 1 8.3246 1.5842 -1.2048 13 7 3.5225 -0.7425 0.0039 14 7 2.2818 -1.0866 0.0058 15 1 -0.3633 0.0051 1.0277 16 1 -0.3634 0.8874 -0.5183 17 1 -0.3633 -0.8926 -0.5094 18 1 1.9588 2.1267 0.0004 19 1 6.9475 -0.8943 0.0127 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259845569.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:51 Heat of formation + Delta-G solvation = 57.776095 kcal Electronic energy + Delta-G solvation = -7850.054372 eV Core-core repulsion = 6175.594328 eV Total energy + Delta-G solvation = -1674.460044 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.99656 -36.10324 -33.41184 -32.54077 -28.25510 -26.69913 -23.30344 -21.53930 -19.35582 -17.48587 -16.04259 -15.97776 -15.10310 -14.34834 -13.86565 -13.69565 -13.17909 -12.96669 -12.92829 -12.02180 -11.74397 -11.56885 -11.15330 -10.67166 -9.27502 -8.70438 -6.64469 1.09058 1.37789 1.59836 1.63715 2.06690 2.19348 2.79546 2.91289 4.30780 4.43948 4.62371 4.89585 5.00560 5.11833 5.13412 5.38308 5.96011 6.03625 6.59734 7.18513 8.21032 8.31328 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.145674 B = 0.017146 C = 0.015468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 192.163269 B = 1632.680669 C = 1809.696651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.081 4.081 3 C -0.131 4.131 4 N -0.166 5.166 5 C -0.344 4.344 6 H 0.149 0.851 7 C -0.006 4.006 8 N -0.812 5.812 9 Si 1.032 2.968 10 H -0.237 1.237 11 H -0.267 1.267 12 H -0.267 1.267 13 N -0.159 5.159 14 N -0.371 5.371 15 H 0.070 0.930 16 H 0.088 0.912 17 H 0.060 0.940 18 H 0.197 0.803 19 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 7.462 -0.032 7.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.229 4.229 3 C -0.284 4.284 4 N 0.061 4.939 5 C -0.480 4.480 6 H 0.166 0.834 7 C -0.220 4.220 8 N -0.439 5.439 9 Si 0.849 3.151 10 H -0.160 1.160 11 H -0.192 1.192 12 H -0.192 1.192 13 N -0.135 5.135 14 N -0.230 5.230 15 H 0.089 0.911 16 H 0.107 0.893 17 H 0.079 0.921 18 H 0.214 0.786 19 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.193 5.824 -0.027 5.828 hybrid contribution 0.193 0.950 0.013 0.969 sum 0.000 6.774 -0.014 6.774 Atomic orbital electron populations 1.19933 0.85101 1.02909 1.02353 1.21985 0.99091 0.88410 1.13462 1.23185 0.83875 1.01410 1.19885 1.47119 1.05999 1.06969 1.33819 1.21089 0.82146 0.92398 1.52347 0.83381 1.27201 1.04090 0.97557 0.93150 1.70325 1.27760 1.11664 1.34165 0.84359 0.73637 0.78415 0.78676 1.15955 1.19203 1.19194 1.82450 1.09970 0.88593 1.32455 1.73964 0.99688 1.28696 1.20605 0.91120 0.89301 0.92087 0.78624 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.52 10.41 71.24 0.74 -0.78 13 2 C -0.08 -3.96 7.10 41.56 0.30 -3.67 13 3 C -0.13 -6.36 11.47 83.18 0.95 -5.41 13 4 N -0.17 -9.55 3.78 -190.21 -0.72 -10.27 13 5 C -0.34 -18.06 10.31 83.98 0.87 -17.20 13 6 H 0.15 6.64 7.83 -2.91 -0.02 6.62 13 7 C -0.01 -0.28 5.50 84.97 0.47 0.19 13 8 N -0.81 -46.03 11.89 21.66 0.26 -45.78 13 9 Si 1.03 36.65 29.55 68.60 2.03 38.68 13 10 H -0.24 -7.46 7.11 99.48 0.71 -6.75 13 11 H -0.27 -9.26 7.11 99.48 0.71 -8.55 13 12 H -0.27 -9.25 7.11 99.48 0.71 -8.55 13 13 N -0.16 -10.09 11.73 37.02 0.43 -9.65 13 14 N -0.37 -21.80 12.33 -48.98 -0.60 -22.40 13 15 H 0.07 2.17 8.14 -2.39 -0.02 2.15 13 16 H 0.09 2.44 8.14 -2.39 -0.02 2.43 13 17 H 0.06 2.03 8.14 -2.39 -0.02 2.01 13 18 H 0.20 7.49 8.06 -2.91 -0.02 7.47 13 19 H 0.29 14.66 8.31 -92.70 -0.77 13.89 13 Total: -1.00 -71.54 184.00 5.97 -65.58 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.25 Total: 10.72 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 3.32 Total: -26.87 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -0.63 Total: -88.10 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -71.54 5.97 -65.58 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845569.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.353 kcal (2) G-P(sol) polarization free energy of solvation -71.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds