Wall clock time and date at job start Mon Mar 30 2020 02:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30949 * 1 3 3 Si 1.86794 * 120.00287 * 2 1 4 4 H 1.48497 * 109.47508 * 274.98023 * 3 2 1 5 5 H 1.48498 * 109.47168 * 34.98027 * 3 2 1 6 6 H 1.48508 * 109.47428 * 154.97746 * 3 2 1 7 7 C 1.39995 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00025 * 186.03494 * 7 2 1 9 9 C 1.39726 * 119.99734 * 6.04001 * 7 2 1 10 10 C 1.39459 * 126.78229 * 174.29840 * 9 7 2 11 11 N 1.33197 * 107.23562 * 180.02562 * 10 9 7 12 12 C 1.31812 * 109.17098 * 0.02562 * 11 10 9 13 13 N 1.37190 * 125.26614 * 180.02562 * 12 11 10 14 14 O 1.34326 * 109.47386 * 0.02562 * 12 11 10 15 15 H 0.97002 * 119.99937 * 0.02562 * 1 2 3 16 16 H 1.08001 * 126.38308 * 0.02562 * 10 9 7 17 17 H 0.96998 * 120.00216 * 179.97438 * 13 12 11 18 18 H 0.97003 * 119.99667 * 359.96011 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6176 0.0000 4 1 2.3859 2.1072 -1.3947 5 1 1.4977 2.6199 0.8026 6 1 3.5898 1.4120 0.5922 7 6 2.0095 -1.2124 0.0005 8 1 3.0850 -1.2150 0.0989 9 6 1.3166 -2.4191 -0.1262 10 6 1.8724 -3.6918 -0.2537 11 7 0.8630 -4.5557 -0.3475 12 6 -0.2773 -3.8974 -0.2867 13 7 -1.5244 -4.4655 -0.3512 14 8 -0.0295 -2.5841 -0.1518 15 1 -0.4850 0.8401 -0.0004 16 1 2.9252 -3.9321 -0.2727 17 1 -2.3153 -3.9066 -0.2982 18 1 -1.6151 -5.4262 -0.4500 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259877425.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:48 Heat of formation + Delta-G solvation = -16.569013 kcal Electronic energy + Delta-G solvation = -7992.856939 eV Core-core repulsion = 6217.454387 eV Total energy + Delta-G solvation = -1775.402552 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -42.86769 -36.02110 -34.96630 -34.44096 -30.65245 -26.30684 -22.67850 -22.32464 -19.41485 -18.21303 -17.40045 -16.75127 -16.67301 -15.45546 -14.59976 -13.88491 -13.16180 -12.97508 -12.70967 -12.13242 -11.98693 -11.37414 -10.92462 -10.75576 -8.82363 -8.77684 -6.28177 1.16169 1.40246 1.57890 1.72284 2.15882 2.23540 2.39549 3.15990 3.55950 4.82791 4.98804 5.12278 5.51177 5.87535 6.18481 6.45363 6.63729 6.81750 6.91956 7.89695 8.26263 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.115433 B = 0.018501 C = 0.016049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 242.507117 B = 1513.067317 C = 1744.238271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.018 3.982 3 Si 1.010 2.990 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.467 4.467 8 H 0.119 0.881 9 C 0.125 3.875 10 C -0.247 4.247 11 N -0.533 5.533 12 C 0.307 3.693 13 N -0.804 5.804 14 O -0.222 6.222 15 H 0.293 0.707 16 H 0.162 0.838 17 H 0.413 0.587 18 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 2.054 -0.107 2.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.198 4.198 3 Si 0.829 3.171 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.171 1.171 7 C -0.497 4.497 8 H 0.137 0.863 9 C 0.071 3.929 10 C -0.386 4.386 11 N -0.272 5.272 12 C 0.010 3.990 13 N -0.369 5.369 14 O -0.111 6.111 15 H 0.103 0.897 16 H 0.179 0.821 17 H 0.244 0.756 18 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.163 1.610 -0.153 1.992 hybrid contribution -0.255 0.969 0.040 1.003 sum -1.417 2.579 -0.113 2.945 Atomic orbital electron populations 1.69907 1.09380 1.31283 1.34646 1.27224 0.95908 1.05691 0.90978 0.84763 0.78910 0.73930 0.79542 1.18495 1.19045 1.17098 1.19070 0.95691 0.87904 1.47058 0.86339 1.20814 0.77590 0.96718 0.97805 1.22762 0.97781 0.88427 1.29659 1.69646 0.97072 1.34455 1.26014 1.21688 0.89920 0.79145 1.08282 1.39852 0.99404 1.10134 1.87494 1.84683 1.26668 1.25175 1.74599 0.89708 0.82072 0.75631 0.73938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.58 12.07 21.85 0.26 -44.32 13 2 C 0.02 0.90 5.49 85.25 0.47 1.37 13 3 Si 1.01 37.34 29.57 68.60 2.03 39.37 13 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 13 5 H -0.27 -9.32 7.11 99.48 0.71 -8.62 13 6 H -0.25 -8.64 7.11 99.48 0.71 -7.94 13 7 C -0.47 -25.74 9.33 23.06 0.22 -25.53 13 8 H 0.12 5.97 7.85 -2.91 -0.02 5.95 13 9 C 0.13 7.40 6.82 22.92 0.16 7.56 13 10 C -0.25 -13.93 11.98 84.78 1.02 -12.91 13 11 N -0.53 -29.21 11.27 -310.61 -3.50 -32.71 13 12 C 0.31 15.98 9.50 179.18 1.70 17.68 13 13 N -0.80 -30.35 9.00 -170.82 -1.54 -31.89 13 14 O -0.22 -13.09 9.19 -16.51 -0.15 -13.25 13 15 H 0.29 14.05 8.30 -92.71 -0.77 13.28 13 16 H 0.16 8.27 8.06 -2.91 -0.02 8.24 13 17 H 0.41 13.40 8.95 -92.71 -0.83 12.57 13 18 H 0.43 13.27 8.95 -92.71 -0.83 12.44 13 Total: -1.00 -67.56 177.65 0.30 -67.26 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.35 Total: 27.37 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 3.56 Total: -11.84 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -4.78 Total: -108.92 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.15 Total: -13.25 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -67.56 0.30 -67.26 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877425.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.690 kcal (2) G-P(sol) polarization free energy of solvation -67.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds