Wall clock time and date at job start Mon Mar 30 2020 02:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28610 * 122.68342 * 2 1 4 4 C 1.46964 * 110.02499 * 179.97438 * 3 2 1 5 5 C 1.54212 * 103.99741 * 0.12504 * 4 3 2 6 6 N 1.36470 * 122.73342 * 180.11903 * 2 1 3 7 7 C 1.36999 * 125.84164 * 359.97438 * 6 2 1 8 8 H 1.07997 * 119.99706 * 353.69049 * 7 6 2 9 9 C 1.38881 * 120.00291 * 173.69325 * 7 6 2 10 10 N 1.31487 * 119.99854 * 7.09903 * 9 7 6 11 11 Si 1.86790 * 120.00258 * 187.09688 * 9 7 6 12 12 H 1.48504 * 109.47001 * 59.99922 * 11 9 7 13 13 H 1.48500 * 109.47432 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47543 * 300.00282 * 11 9 7 15 15 H 1.09001 * 109.47821 * 273.55194 * 1 2 3 16 16 H 1.09000 * 109.47235 * 33.55666 * 1 2 3 17 17 H 1.09005 * 109.47412 * 153.55226 * 1 2 3 18 18 H 1.09000 * 110.54553 * 241.45738 * 4 3 2 19 19 H 1.08996 * 110.54788 * 118.79436 * 4 3 2 20 20 H 1.09007 * 110.69449 * 118.32792 * 5 4 3 21 21 H 1.09004 * 110.69804 * 241.53228 * 5 4 3 22 22 H 0.96996 * 120.00030 * 174.99233 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2014 1.0825 0.0000 4 6 3.6353 0.7604 0.0006 5 6 3.6713 -0.7813 -0.0023 6 7 2.2448 -1.1480 -0.0024 7 6 1.7444 -2.4233 -0.0045 8 1 0.6818 -2.5865 0.0984 9 6 2.6035 -3.5062 -0.1390 10 7 3.9048 -3.3188 -0.1238 11 14 1.9103 -5.2289 -0.3412 12 1 1.0698 -5.2838 -1.5642 13 1 3.0266 -6.2004 -0.4644 14 1 1.0833 -5.5720 0.8435 15 1 -0.3635 0.0637 1.0257 16 1 -0.3634 0.8564 -0.5680 17 1 -0.3634 -0.9201 -0.4577 18 1 4.1151 1.1526 0.8973 19 1 4.1166 1.1560 -0.8937 20 1 4.1648 -1.1534 -0.9002 21 1 4.1655 -1.1568 0.8938 22 1 4.5048 -4.0806 -0.1446 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887359.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:13 Heat of formation + Delta-G solvation = 13.255822 kcal Electronic energy + Delta-G solvation = -8338.230013 eV Core-core repulsion = 6699.953858 eV Total energy + Delta-G solvation = -1638.276156 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.60156 -35.27161 -32.58628 -31.91412 -27.75113 -26.71167 -23.03644 -20.34891 -18.86625 -17.07796 -16.58270 -15.87677 -15.08160 -14.05348 -13.80851 -13.47117 -13.30103 -12.84483 -12.77501 -12.58740 -12.22441 -12.15246 -11.69401 -10.73682 -10.32377 -9.01466 -8.28391 -5.73999 1.42464 1.44969 1.55862 1.93082 2.29479 3.14727 3.22754 3.91668 4.22493 4.46619 4.71000 4.82183 4.90585 4.98138 5.07379 5.28310 5.39519 5.61426 5.83323 6.44714 7.08536 7.67640 7.93101 8.80217 Molecular weight = 154.08amu Principal moments of inertia in cm(-1) A = 0.078550 B = 0.021509 C = 0.017173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.376712 B = 1301.483213 C = 1630.100981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.316 3.684 3 N -0.671 5.671 4 C 0.026 3.974 5 C 0.127 3.873 6 N -0.493 5.493 7 C -0.322 4.322 8 H 0.115 0.885 9 C -0.029 4.029 10 N -0.923 5.923 11 Si 1.003 2.997 12 H -0.265 1.265 13 H -0.287 1.287 14 H -0.263 1.263 15 H 0.087 0.913 16 H 0.090 0.910 17 H 0.077 0.923 18 H 0.065 0.935 19 H 0.066 0.934 20 H 0.047 0.953 21 H 0.042 0.958 22 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 -0.456 -0.085 4.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.043 3.957 3 N -0.414 5.414 4 C -0.105 4.105 5 C 0.002 3.998 6 N -0.200 5.200 7 C -0.450 4.450 8 H 0.133 0.867 9 C -0.228 4.228 10 N -0.564 5.564 11 Si 0.827 3.173 12 H -0.190 1.190 13 H -0.213 1.213 14 H -0.188 1.188 15 H 0.106 0.894 16 H 0.109 0.891 17 H 0.096 0.904 18 H 0.084 0.916 19 H 0.084 0.916 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.268 0.186 -0.162 4.275 hybrid contribution 0.743 -1.638 -0.001 1.799 sum -3.525 -1.452 -0.163 3.816 Atomic orbital electron populations 1.20435 0.85279 1.03767 1.03835 1.23740 0.96842 0.83387 0.91712 1.74187 1.01672 1.24221 1.41274 1.22980 0.93940 0.93040 1.00547 1.22079 0.84124 0.93293 1.00347 1.44112 1.04348 1.04409 1.67120 1.19894 0.94897 0.81152 1.49093 0.86726 1.26246 0.95497 1.04222 0.96835 1.70103 1.03088 1.32379 1.50794 0.84822 0.77378 0.75806 0.79337 1.19008 1.21292 1.18756 0.89441 0.89088 0.90394 0.91650 0.91620 0.93450 0.93982 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.68 10.02 71.23 0.71 -1.97 14 2 C 0.32 15.04 7.64 138.20 1.06 16.10 14 3 N -0.67 -32.62 11.61 -335.18 -3.89 -36.51 14 4 C 0.03 1.20 8.04 86.70 0.70 1.90 14 5 C 0.13 6.66 5.72 86.64 0.50 7.16 14 6 N -0.49 -26.21 3.15 -506.50 -1.59 -27.80 14 7 C -0.32 -16.96 9.71 84.04 0.82 -16.15 14 8 H 0.12 5.46 6.73 -2.91 -0.02 5.44 14 9 C -0.03 -1.50 5.48 84.90 0.47 -1.04 14 10 N -0.92 -51.60 10.47 21.66 0.23 -51.37 14 11 Si 1.00 40.81 29.56 68.60 2.03 42.84 14 12 H -0.27 -10.33 7.11 99.48 0.71 -9.62 14 13 H -0.29 -11.73 7.11 99.48 0.71 -11.02 14 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 14 15 H 0.09 2.80 8.14 -2.39 -0.02 2.78 14 16 H 0.09 2.87 8.14 -2.39 -0.02 2.86 14 17 H 0.08 2.67 6.89 -2.38 -0.02 2.65 14 18 H 0.07 2.85 8.14 -2.39 -0.02 2.83 14 19 H 0.07 2.87 8.14 -2.39 -0.02 2.85 14 20 H 0.05 2.64 7.40 -2.38 -0.02 2.62 14 21 H 0.04 2.33 7.70 -2.38 -0.02 2.31 14 22 H 0.27 14.18 8.32 -92.71 -0.77 13.41 14 Total: -1.00 -61.35 192.33 2.22 -59.14 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.20 Total: 7.71 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 4.24 Total: 6.00 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.26 Total: -115.68 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -61.35 2.22 -59.14 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887359.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.395 kcal (2) G-P(sol) polarization free energy of solvation -61.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds