Wall clock time and date at job start Mon Mar 30 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47243 * 119.99929 * 3 2 1 7 7 C 1.37871 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.52996 * 115.55189 * 180.02562 * 9 7 2 11 11 C 1.53002 * 117.49888 * 325.67047 * 10 9 7 12 12 C 1.53000 * 117.50107 * 34.32809 * 10 9 7 13 13 C 1.53007 * 117.49635 * 325.67340 * 9 7 2 14 14 C 1.53000 * 117.49626 * 34.33222 * 9 7 2 15 15 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 16 16 H 1.09002 * 115.54951 * 180.02562 * 10 9 7 17 17 H 1.09000 * 117.49996 * 215.00804 * 11 10 9 18 18 H 1.08999 * 117.49664 * 0.02562 * 11 10 9 19 19 H 1.09008 * 117.49673 * 359.97438 * 12 10 9 20 20 H 1.08999 * 117.49942 * 144.97366 * 12 10 9 21 21 H 1.08998 * 117.49729 * 215.00151 * 13 9 7 22 22 H 1.08995 * 117.49900 * 0.02562 * 13 9 7 23 23 H 1.09001 * 117.50067 * 359.97438 * 14 9 7 24 24 H 1.08997 * 117.49503 * 144.97418 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.1165 -3.7608 -0.0005 11 6 3.4403 -3.7094 -0.7659 12 6 3.4403 -3.7094 0.7648 13 6 -0.0726 -2.5507 0.7653 14 6 -0.0731 -2.5504 -0.7655 15 1 -0.4850 0.8401 0.0004 16 1 1.5714 -4.7048 -0.0010 17 1 3.7662 -4.6195 -1.2695 18 1 3.6948 -2.7766 -1.2691 19 1 3.6949 -2.7765 1.2680 20 1 3.7660 -4.6194 1.2686 21 1 -0.3267 -3.4835 1.2687 22 1 -0.3985 -1.6406 1.2687 23 1 -0.3994 -1.6400 -1.2683 24 1 -0.3273 -3.4828 -1.2694 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918630.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:40 Heat of formation + Delta-G solvation = 49.443594 kcal Electronic energy + Delta-G solvation = -8144.796078 eV Core-core repulsion = 6638.940964 eV Total energy + Delta-G solvation = -1505.855114 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.44347 -34.22937 -31.34139 -25.63847 -22.23121 -21.53688 -20.44669 -18.75734 -15.64874 -15.20687 -14.29896 -13.70258 -12.54632 -11.89407 -11.06996 -11.04885 -10.68465 -10.60920 -10.16694 -10.15715 -9.88065 -9.59263 -9.25623 -8.50490 -8.20477 -7.80081 -5.92284 -3.97474 3.31072 3.35980 3.38333 4.41264 4.72689 5.19541 5.68924 5.86289 5.96751 6.29393 6.42234 6.45474 6.63747 6.87666 7.01858 7.09641 7.15772 7.35430 7.45054 7.75779 8.07590 8.30336 8.55604 8.98763 9.57068 11.03772 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.059061 B = 0.024619 C = 0.019112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.973420 B = 1137.060535 C = 1464.704134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.473 4.473 8 H 0.062 0.938 9 C 0.043 3.957 10 C -0.101 4.101 11 C -0.181 4.181 12 C -0.181 4.181 13 C -0.188 4.188 14 C -0.188 4.188 15 H 0.259 0.741 16 H 0.079 0.921 17 H 0.073 0.927 18 H 0.098 0.902 19 H 0.098 0.902 20 H 0.073 0.927 21 H 0.040 0.960 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 -3.185 0.001 4.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.043 3.957 10 C -0.119 4.119 11 C -0.218 4.218 12 C -0.218 4.218 13 C -0.226 4.226 14 C -0.226 4.226 15 H 0.069 0.931 16 H 0.097 0.903 17 H 0.092 0.908 18 H 0.116 0.884 19 H 0.116 0.884 20 H 0.092 0.908 21 H 0.059 0.941 22 H 0.126 0.874 23 H 0.126 0.874 24 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.022 -3.038 0.001 4.285 hybrid contribution 0.318 0.808 0.001 0.868 sum 3.339 -2.230 0.002 4.015 Atomic orbital electron populations 1.70024 1.05762 1.25998 1.50027 1.25018 0.94984 0.99172 0.95240 0.86606 0.79520 0.82974 0.78592 1.20287 1.21293 1.20283 1.20591 0.92653 0.88844 1.48991 0.92002 1.18428 0.85583 0.90944 1.00748 1.21744 0.88974 0.98020 1.03151 1.22832 1.02992 1.01894 0.94121 1.22833 1.02985 1.01895 0.94124 1.22792 1.05829 0.99597 0.94351 1.22791 1.05807 0.99605 0.94357 0.93108 0.90298 0.90819 0.88376 0.88378 0.90818 0.94105 0.87368 0.87364 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.90 8.59 55.43 0.48 -24.43 14 2 C 0.06 1.57 5.27 -17.82 -0.09 1.48 14 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 14 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 14 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 7 C -0.47 -13.04 7.95 -34.44 -0.27 -13.31 14 8 H 0.06 1.66 6.03 -52.49 -0.32 1.34 14 9 C 0.04 1.12 2.46 -155.66 -0.38 0.74 14 10 C -0.10 -2.22 5.84 -90.62 -0.53 -2.75 14 11 C -0.18 -3.59 9.81 -26.69 -0.26 -3.85 14 12 C -0.18 -3.59 9.81 -26.70 -0.26 -3.85 14 13 C -0.19 -4.88 9.39 -26.69 -0.25 -5.13 14 14 C -0.19 -4.88 9.39 -26.69 -0.25 -5.13 14 15 H 0.26 7.03 8.31 -40.82 -0.34 6.69 14 16 H 0.08 1.63 8.14 -51.93 -0.42 1.21 14 17 H 0.07 1.26 8.14 -51.93 -0.42 0.83 14 18 H 0.10 2.07 7.11 -51.93 -0.37 1.70 14 19 H 0.10 2.07 7.11 -51.92 -0.37 1.70 14 20 H 0.07 1.26 8.14 -51.93 -0.42 0.83 14 21 H 0.04 0.97 8.14 -51.93 -0.42 0.54 14 22 H 0.11 3.05 6.28 -51.93 -0.33 2.73 14 23 H 0.11 3.05 6.28 -51.93 -0.33 2.73 14 24 H 0.04 0.97 8.14 -51.93 -0.42 0.54 14 LS Contribution 201.20 15.07 3.03 3.03 Total: -1.00 -27.96 201.20 -6.77 -34.74 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -2.96 Total: 2.23 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: -2.31 Total: -31.81 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.48 Total: -24.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -27.96 -6.77 -34.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918630.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.183 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds