Wall clock time and date at job start Mon Mar 30 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47243 * 119.99929 * 3 2 1 7 7 C 1.37871 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.52996 * 115.55189 * 180.02562 * 9 7 2 11 11 C 1.53002 * 117.49888 * 325.67047 * 10 9 7 12 12 C 1.53000 * 117.50107 * 34.32809 * 10 9 7 13 13 C 1.53007 * 117.49635 * 325.67340 * 9 7 2 14 14 C 1.53000 * 117.49626 * 34.33222 * 9 7 2 15 15 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 16 16 H 1.09002 * 115.54951 * 180.02562 * 10 9 7 17 17 H 1.09000 * 117.49996 * 215.00804 * 11 10 9 18 18 H 1.08999 * 117.49664 * 0.02562 * 11 10 9 19 19 H 1.09008 * 117.49673 * 359.97438 * 12 10 9 20 20 H 1.08999 * 117.49942 * 144.97366 * 12 10 9 21 21 H 1.08998 * 117.49729 * 215.00151 * 13 9 7 22 22 H 1.08995 * 117.49900 * 0.02562 * 13 9 7 23 23 H 1.09001 * 117.50067 * 359.97438 * 14 9 7 24 24 H 1.08997 * 117.49503 * 144.97418 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.1165 -3.7608 -0.0005 11 6 3.4403 -3.7094 -0.7659 12 6 3.4403 -3.7094 0.7648 13 6 -0.0726 -2.5507 0.7653 14 6 -0.0731 -2.5504 -0.7655 15 1 -0.4850 0.8401 0.0004 16 1 1.5714 -4.7048 -0.0010 17 1 3.7662 -4.6195 -1.2695 18 1 3.6948 -2.7766 -1.2691 19 1 3.6949 -2.7765 1.2680 20 1 3.7660 -4.6194 1.2686 21 1 -0.3267 -3.4835 1.2687 22 1 -0.3985 -1.6406 1.2687 23 1 -0.3994 -1.6400 -1.2683 24 1 -0.3273 -3.4828 -1.2694 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918630.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:40 Heat of formation + Delta-G solvation = 34.503706 kcal Electronic energy + Delta-G solvation = -8145.443920 eV Core-core repulsion = 6638.940964 eV Total energy + Delta-G solvation = -1506.502956 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.27566 -36.04516 -33.42504 -27.74487 -24.02436 -23.15508 -22.42911 -20.68782 -17.69580 -17.13806 -16.01012 -15.57024 -14.42860 -13.74279 -13.06803 -12.96758 -12.53321 -12.23174 -12.19538 -11.93875 -11.91162 -11.26084 -11.15526 -10.50899 -10.18966 -9.73375 -8.00971 -6.12816 1.42174 1.42806 1.50592 2.42205 2.95911 3.24249 4.04667 4.07587 4.32722 4.50276 4.63634 4.89560 4.93456 5.07336 5.14984 5.28860 5.31762 5.51339 5.54569 5.66050 6.00011 6.19685 6.46034 6.91094 7.44548 8.93274 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.059061 B = 0.024619 C = 0.019112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.973420 B = 1137.060535 C = 1464.704134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.493 4.493 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.125 4.125 11 C -0.169 4.169 12 C -0.169 4.169 13 C -0.191 4.191 14 C -0.191 4.191 15 H 0.257 0.743 16 H 0.096 0.904 17 H 0.108 0.892 18 H 0.078 0.922 19 H 0.078 0.922 20 H 0.108 0.892 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.374 -3.980 0.002 5.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.032 3.968 10 C -0.143 4.143 11 C -0.206 4.206 12 C -0.206 4.206 13 C -0.229 4.229 14 C -0.229 4.229 15 H 0.066 0.934 16 H 0.114 0.886 17 H 0.126 0.874 18 H 0.097 0.903 19 H 0.097 0.903 20 H 0.126 0.874 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.228 -3.839 0.001 5.711 hybrid contribution -0.075 1.046 0.001 1.048 sum 4.152 -2.793 0.002 5.004 Atomic orbital electron populations 1.70186 1.06969 1.26501 1.50479 1.25796 0.95827 1.02452 0.95056 0.85611 0.78286 0.78950 0.78775 1.19691 1.21182 1.19679 1.20929 0.92959 0.90068 1.49094 0.91913 1.18657 0.85905 0.92347 0.99871 1.21715 0.89653 0.96799 1.06151 1.22866 1.00811 1.02582 0.94321 1.22867 1.00803 1.02582 0.94324 1.22683 1.06653 0.99292 0.94248 1.22683 1.06633 0.99298 0.94256 0.93362 0.88631 0.87356 0.90326 0.90328 0.87355 0.91925 0.90195 0.90191 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.95 8.59 21.44 0.18 -51.77 14 2 C 0.01 0.41 5.27 84.65 0.45 0.86 14 3 Si 0.96 43.71 29.54 68.60 2.03 45.73 14 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 14 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 14 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 14 7 C -0.49 -27.14 7.95 25.60 0.20 -26.94 14 8 H 0.06 3.35 6.03 -2.91 -0.02 3.33 14 9 C 0.03 1.67 2.46 -52.92 -0.13 1.54 14 10 C -0.13 -5.23 5.84 -10.79 -0.06 -5.30 14 11 C -0.17 -6.20 9.81 30.62 0.30 -5.90 14 12 C -0.17 -6.20 9.81 30.62 0.30 -5.90 14 13 C -0.19 -9.90 9.39 30.62 0.29 -9.61 14 14 C -0.19 -9.89 9.39 30.62 0.29 -9.61 14 15 H 0.26 14.21 8.31 -92.70 -0.77 13.44 14 16 H 0.10 3.65 8.14 -2.39 -0.02 3.63 14 17 H 0.11 3.22 8.14 -2.39 -0.02 3.20 14 18 H 0.08 3.19 7.11 -2.39 -0.02 3.17 14 19 H 0.08 3.19 7.11 -2.38 -0.02 3.17 14 20 H 0.11 3.22 8.14 -2.39 -0.02 3.20 14 21 H 0.06 2.90 8.14 -2.39 -0.02 2.88 14 22 H 0.08 4.60 6.28 -2.39 -0.02 4.58 14 23 H 0.08 4.60 6.28 -2.39 -0.01 4.58 14 24 H 0.06 2.90 8.14 -2.39 -0.02 2.88 14 Total: -1.00 -58.70 201.20 5.01 -53.69 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.17 Total: 13.19 kcal Atomic # 6 Polarization: -62.48 SS G_CDS: 1.63 Total: -60.84 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.18 Total: -51.77 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -58.70 5.01 -53.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918630.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.191 kcal (2) G-P(sol) polarization free energy of solvation -58.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds