Wall clock time and date at job start Mon Mar 30 2020 02:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86798 * 119.99800 * 2 1 4 4 H 1.48501 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47236 * 299.99908 * 3 2 1 6 6 H 1.48497 * 109.47257 * 59.99935 * 3 2 1 7 7 C 1.40305 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99754 * 171.43110 * 7 2 1 9 9 C 1.40065 * 120.00374 * 351.43891 * 7 2 1 10 10 C 1.34755 * 124.79795 * 170.60924 * 9 7 2 11 11 C 1.51128 * 110.40699 * 180.26324 * 10 9 7 12 12 H 1.08996 * 110.34764 * 224.36882 * 11 10 9 13 13 O 1.42902 * 110.43057 * 102.15186 * 11 10 9 14 14 C 1.54521 * 104.95163 * 343.23947 * 11 10 9 15 15 C 1.51124 * 124.79434 * 350.90711 * 9 7 2 16 16 H 0.96998 * 120.00102 * 0.02562 * 1 2 3 17 17 H 1.07996 * 124.79376 * 0.22509 * 10 9 7 18 18 H 0.96696 * 113.99783 * 64.42114 * 13 11 10 19 19 H 1.08997 * 110.92383 * 267.25431 * 14 11 10 20 20 H 1.08999 * 110.92517 * 143.60322 * 14 11 10 21 21 H 1.08990 * 110.34685 * 315.36836 * 15 9 7 22 22 H 1.09007 * 110.34126 * 77.63174 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8821 2.3965 -1.2125 6 1 1.8821 2.3965 1.2125 7 6 2.0084 -1.2151 0.0005 8 1 3.0794 -1.2204 -0.1388 9 6 1.3198 -2.4213 0.1816 10 6 1.8587 -3.6460 0.0215 11 6 0.8261 -4.7156 0.2926 12 1 1.2530 -5.5071 0.9085 13 8 0.3320 -5.2546 -0.9352 14 6 -0.3061 -3.9924 1.0560 15 6 -0.1342 -2.5331 0.5780 16 1 -0.4850 0.8400 -0.0004 17 1 2.8835 -3.8362 -0.2612 18 1 0.9995 -5.7203 -1.4571 19 1 -0.1598 -4.0690 2.1334 20 1 -1.2817 -4.3841 0.7682 21 1 -0.3606 -1.8399 1.3880 22 1 -0.7771 -2.3373 -0.2802 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259952801.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:15 Heat of formation + Delta-G solvation = -53.744441 kcal Electronic energy + Delta-G solvation = -8201.940569 eV Core-core repulsion = 6528.466312 eV Total energy + Delta-G solvation = -1673.474256 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -37.48493 -34.46989 -32.57069 -28.54343 -25.96714 -24.15547 -19.51926 -18.37374 -16.40029 -15.84565 -14.92087 -13.97146 -13.04458 -12.50401 -12.35480 -11.53817 -11.34605 -11.04402 -10.46191 -10.33950 -10.02832 -9.59270 -9.28330 -9.16068 -8.60907 -7.47727 -6.69923 -4.32494 2.93791 3.08992 3.15455 3.85705 3.96943 5.25128 5.50316 6.13378 6.19950 6.38283 6.82343 6.85720 7.15165 7.20537 7.30818 7.49528 7.64839 8.01764 8.36283 8.57168 8.73804 9.13169 9.22621 10.25066 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.109806 B = 0.016860 C = 0.015657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 254.933133 B = 1660.349074 C = 1787.916523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.075 0.925 9 C 0.099 3.901 10 C -0.480 4.480 11 C 0.163 3.837 12 H 0.019 0.981 13 O -0.582 6.582 14 C -0.125 4.125 15 C -0.058 4.058 16 H 0.279 0.721 17 H 0.086 0.914 18 H 0.360 0.640 19 H 0.061 0.939 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -0.682 1.068 1.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.502 4.502 11 C 0.106 3.894 12 H 0.036 0.964 13 O -0.387 6.387 14 C -0.163 4.163 15 C -0.096 4.096 16 H 0.090 0.910 17 H 0.104 0.896 18 H 0.206 0.794 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.363 -0.246 1.301 1.373 hybrid contribution 0.974 0.559 -0.207 1.142 sum 0.611 0.313 1.094 1.292 Atomic orbital electron populations 1.69767 1.07604 1.29056 1.36736 1.26104 0.94838 1.01592 0.91901 0.86184 0.80850 0.80737 0.78443 1.18479 1.19957 1.19839 1.19253 0.95377 0.90272 1.43454 0.90726 1.18999 0.91989 0.92518 0.86805 1.22791 0.98228 0.93838 1.35367 1.20875 0.92721 0.92562 0.83254 0.96352 1.86455 1.40607 1.75702 1.35936 1.22442 0.97541 0.98443 0.97887 1.20989 0.96421 0.91837 1.00312 0.91017 0.89614 0.79438 0.92024 0.92471 0.91975 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.20 10.66 55.57 0.59 -20.60 14 2 C 0.07 1.89 5.46 -17.26 -0.09 1.80 14 3 Si 0.91 19.27 29.57 -169.99 -5.03 14.24 14 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 14 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 14 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 14 7 C -0.45 -12.75 9.25 -38.12 -0.35 -13.11 14 8 H 0.07 2.06 7.87 -52.48 -0.41 1.64 14 9 C 0.10 2.81 5.83 -104.96 -0.61 2.20 14 10 C -0.48 -12.87 10.46 -35.33 -0.37 -13.24 14 11 C 0.16 3.89 4.24 -26.88 -0.11 3.77 14 12 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 14 13 O -0.58 -13.34 13.36 -35.23 -0.47 -13.81 14 14 C -0.13 -2.90 6.86 -25.14 -0.17 -3.07 14 15 C -0.06 -1.53 4.82 -26.88 -0.13 -1.66 14 16 H 0.28 6.65 8.29 -40.82 -0.34 6.31 14 17 H 0.09 2.27 8.06 -52.49 -0.42 1.84 14 18 H 0.36 6.65 9.12 45.56 0.42 7.07 14 19 H 0.06 1.29 8.14 -51.93 -0.42 0.87 14 20 H 0.06 1.24 8.10 -51.93 -0.42 0.82 14 21 H 0.06 1.64 7.37 -51.93 -0.38 1.25 14 22 H 0.07 1.87 7.85 -51.93 -0.41 1.47 14 LS Contribution 194.77 15.07 2.94 2.94 Total: -1.00 -29.43 194.77 -5.43 -34.85 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -1.61 Total: 5.70 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -1.84 Total: -23.32 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.59 Total: -20.60 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.47 Total: -13.81 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -29.43 -5.43 -34.85 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952801.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.893 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds