Wall clock time and date at job start Mon Mar 30 2020 02:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86800 * 120.00361 * 2 1 4 4 H 1.48494 * 109.47134 * 274.98082 * 3 2 1 5 5 H 1.48504 * 109.46812 * 34.97742 * 3 2 1 6 6 H 1.48498 * 109.47272 * 154.97528 * 3 2 1 7 7 C 1.40309 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99772 * 195.42672 * 7 2 1 9 9 C 1.40073 * 120.00190 * 15.42763 * 7 2 1 10 10 C 1.34078 * 118.82567 * 197.12950 * 9 7 2 11 11 C 1.50219 * 122.69455 * 180.51682 * 10 9 7 12 12 N 1.46822 * 110.20963 * 342.73650 * 11 10 9 13 13 C 1.47171 * 110.36077 * 51.60773 * 12 11 10 14 14 C 1.50372 * 118.82673 * 17.15250 * 9 7 2 15 15 H 0.97004 * 119.99775 * 359.97438 * 1 2 3 16 16 H 1.07989 * 118.65471 * 0.51128 * 10 9 7 17 17 H 1.09006 * 109.34217 * 222.51517 * 11 10 9 18 18 H 1.08998 * 109.23055 * 102.89670 * 11 10 9 19 19 H 1.00908 * 110.99844 * 175.09967 * 12 11 10 20 20 H 1.08996 * 109.61420 * 170.22832 * 13 12 11 21 21 H 1.08998 * 109.76100 * 49.79207 * 13 12 11 22 22 H 1.09006 * 109.43897 * 43.19958 * 14 9 7 23 23 H 1.09002 * 109.43545 * 283.33045 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3832 2.1071 -1.3947 5 1 1.4949 2.6200 0.8026 6 1 3.5871 1.4120 0.5922 7 6 2.0084 -1.2151 -0.0005 8 1 3.0592 -1.2321 0.2483 9 6 1.3459 -2.4062 -0.3238 10 6 1.9150 -3.5735 0.0096 11 6 1.2871 -4.9015 -0.3046 12 7 -0.1370 -4.7279 -0.6170 13 6 -0.3127 -3.6915 -1.6471 14 6 0.0219 -2.3301 -1.0327 15 1 -0.4850 0.8401 0.0004 16 1 2.8639 -3.5584 0.5251 17 1 1.3900 -5.5623 0.5562 18 1 1.7936 -5.3442 -1.1622 19 1 -0.5524 -5.6004 -0.9074 20 1 -1.3459 -3.6922 -1.9942 21 1 0.3552 -3.8885 -2.4857 22 1 0.0754 -1.5795 -1.8214 23 1 -0.7553 -2.0525 -0.3207 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259970398.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:42 Heat of formation + Delta-G solvation = -16.370463 kcal Electronic energy + Delta-G solvation = -8181.759039 eV Core-core repulsion = 6607.624102 eV Total energy + Delta-G solvation = -1574.134937 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.04955 -35.79796 -32.55723 -31.11689 -27.74586 -24.05554 -23.30011 -19.52167 -18.02795 -17.22760 -16.55296 -15.27865 -15.05186 -14.55330 -14.04747 -13.54740 -13.08010 -12.87854 -12.59004 -12.23666 -12.16075 -11.43718 -11.06172 -10.87337 -9.52911 -9.19556 -8.50538 -6.30746 1.25520 1.37245 1.50468 1.96572 2.23513 3.24538 3.56061 4.36214 4.48297 4.69059 4.78230 4.84167 5.09684 5.25395 5.27709 5.32079 5.71561 5.92181 6.19463 6.36124 6.63978 6.74359 7.13176 7.32398 8.37136 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.105465 B = 0.018223 C = 0.016279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 265.426950 B = 1536.152281 C = 1719.576691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.063 3.937 10 C -0.434 4.434 11 C 0.141 3.859 12 N -0.691 5.691 13 C 0.059 3.941 14 C -0.044 4.044 15 H 0.287 0.713 16 H 0.057 0.943 17 H 0.060 0.940 18 H 0.007 0.993 19 H 0.345 0.655 20 H 0.085 0.915 21 H 0.020 0.980 22 H 0.043 0.957 23 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 -0.938 -3.012 3.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.061 3.939 10 C -0.456 4.456 11 C 0.012 3.988 12 N -0.322 5.322 13 C -0.070 4.070 14 C -0.082 4.082 15 H 0.098 0.902 16 H 0.075 0.925 17 H 0.078 0.922 18 H 0.025 0.975 19 H 0.163 0.837 20 H 0.104 0.896 21 H 0.038 0.962 22 H 0.061 0.939 23 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.451 -0.364 -2.474 2.892 hybrid contribution 0.906 0.242 -0.576 1.100 sum -0.546 -0.122 -3.050 3.101 Atomic orbital electron populations 1.69850 1.08632 1.30302 1.36765 1.26801 0.95632 1.04301 0.91080 0.85223 0.78870 0.76264 0.79453 1.18416 1.18871 1.19165 1.19713 0.96937 0.93182 1.44921 0.92633 1.18550 0.92393 0.93010 0.89938 1.21724 1.05200 0.93588 1.25069 1.20077 0.86331 0.95261 0.97115 1.60541 1.15818 1.11249 1.44621 1.22075 1.00155 0.92907 0.91912 1.20211 0.96118 0.93759 0.98062 0.90190 0.92510 0.92165 0.97497 0.83742 0.89637 0.96221 0.93861 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.96 10.39 21.89 0.23 -43.73 14 2 C 0.04 1.92 5.18 85.37 0.44 2.36 14 3 Si 0.98 40.13 29.59 68.60 2.03 42.16 14 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 14 5 H -0.26 -10.12 7.11 99.48 0.71 -9.41 14 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 14 7 C -0.52 -30.20 8.90 23.22 0.21 -29.99 14 8 H 0.06 3.27 7.88 -2.91 -0.02 3.25 14 9 C 0.06 3.63 5.60 -20.47 -0.11 3.51 14 10 C -0.43 -23.73 9.70 24.59 0.24 -23.49 14 11 C 0.14 6.27 6.74 85.42 0.58 6.85 14 12 N -0.69 -28.47 6.89 -518.18 -3.57 -32.04 14 13 C 0.06 2.48 6.59 86.27 0.57 3.05 14 14 C -0.04 -2.26 4.30 29.77 0.13 -2.13 14 15 H 0.29 13.68 8.29 -92.71 -0.77 12.91 14 16 H 0.06 3.20 7.98 -2.92 -0.02 3.18 14 17 H 0.06 2.49 8.14 -2.38 -0.02 2.47 14 18 H 0.01 0.30 8.14 -2.39 -0.02 0.28 14 19 H 0.34 11.24 8.90 -89.69 -0.80 10.44 14 20 H 0.09 3.04 8.14 -2.39 -0.02 3.02 14 21 H 0.02 0.81 8.07 -2.39 -0.02 0.79 14 22 H 0.04 2.26 7.59 -2.38 -0.02 2.24 14 23 H 0.07 3.71 7.01 -2.39 -0.02 3.69 14 Total: -1.00 -61.42 195.37 1.13 -60.29 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.40 Total: 13.17 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 2.05 Total: -39.85 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -3.34 Total: -75.77 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -61.42 1.13 -60.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259970398.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.920 kcal (2) G-P(sol) polarization free energy of solvation -61.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds