Wall clock time and date at job start Mon Mar 30 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86797 * 120.00029 * 2 1 4 4 H 1.48494 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47376 * 299.99996 * 3 2 1 6 6 H 1.48503 * 109.46745 * 59.99992 * 3 2 1 7 7 C 1.40305 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00030 * 195.58279 * 7 2 1 9 9 C 1.40071 * 120.00335 * 15.57579 * 7 2 1 10 10 C 1.34239 * 118.85823 * 196.73702 * 9 7 2 11 11 C 1.50452 * 121.97074 * 180.55914 * 10 9 7 12 12 C 1.53106 * 109.55517 * 343.14521 * 11 10 9 13 13 O 1.43236 * 108.70745 * 48.36290 * 12 11 10 14 14 C 1.42806 * 113.24394 * 290.86728 * 13 12 11 15 15 H 0.96996 * 119.99988 * 359.97438 * 1 2 3 16 16 H 1.07991 * 119.01640 * 0.53687 * 10 9 7 17 17 H 1.08999 * 109.46018 * 223.11764 * 11 10 9 18 18 H 1.09001 * 109.44567 * 103.15528 * 11 10 9 19 19 H 1.09002 * 109.63041 * 168.17871 * 12 11 10 20 20 H 1.09007 * 109.62353 * 288.55201 * 12 11 10 21 21 H 1.08996 * 109.20787 * 290.42502 * 14 13 12 22 22 H 1.09001 * 109.31384 * 170.80239 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7009 1.3463 0.0006 5 1 1.8822 2.3965 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0084 -1.2151 -0.0005 8 1 3.0586 -1.2325 0.2507 9 6 1.3467 -2.4057 -0.3268 10 6 1.9190 -3.5754 -0.0006 11 6 1.2761 -4.8956 -0.3284 12 6 -0.2038 -4.6779 -0.6551 13 8 -0.3137 -3.5992 -1.5911 14 6 0.0201 -2.3294 -1.0294 15 1 -0.4850 0.8400 0.0004 16 1 2.8694 -3.5686 0.5120 17 1 1.3643 -5.5649 0.5274 18 1 1.7764 -5.3391 -1.1893 19 1 -0.6197 -5.5857 -1.0923 20 1 -0.7471 -4.4284 0.2564 21 1 -0.7510 -2.0391 -0.3158 22 1 0.0745 -1.5863 -1.8250 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983455.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:28 Heat of formation + Delta-G solvation = -65.697512 kcal Electronic energy + Delta-G solvation = -8313.348461 eV Core-core repulsion = 6639.355881 eV Total energy + Delta-G solvation = -1673.992580 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.82142 -36.16272 -33.71852 -31.73976 -27.53044 -25.63156 -23.78622 -19.75368 -18.51355 -17.25020 -16.55828 -16.34544 -15.42314 -14.36518 -14.19464 -13.67570 -13.27059 -13.16338 -12.81363 -12.49971 -12.11671 -11.56641 -11.31668 -11.08822 -10.18705 -9.54300 -8.63455 -6.37560 1.21176 1.37555 1.52435 1.86724 2.21209 3.06563 3.31716 4.34213 4.46673 4.53551 4.62203 4.89803 4.99069 5.11611 5.23266 5.31612 5.44565 5.81574 6.20018 6.34126 6.60216 6.96811 7.18066 8.29414 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.105731 B = 0.018475 C = 0.016452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.758480 B = 1515.196976 C = 1701.555859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.015 3.985 10 C -0.419 4.419 11 C -0.075 4.075 12 C 0.060 3.940 13 O -0.417 6.417 14 C 0.131 3.869 15 H 0.292 0.708 16 H 0.060 0.940 17 H 0.067 0.933 18 H 0.045 0.955 19 H 0.114 0.886 20 H 0.040 0.960 21 H 0.062 0.938 22 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -0.412 -0.481 1.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.013 3.987 10 C -0.440 4.440 11 C -0.112 4.112 12 C -0.016 4.016 13 O -0.337 6.337 14 C 0.055 3.945 15 H 0.103 0.897 16 H 0.078 0.922 17 H 0.085 0.915 18 H 0.063 0.937 19 H 0.132 0.868 20 H 0.058 0.942 21 H 0.080 0.920 22 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.120 -0.289 -0.668 1.336 hybrid contribution 0.637 0.750 0.440 1.078 sum -0.483 0.461 -0.228 0.706 Atomic orbital electron populations 1.69704 1.08707 1.30915 1.37108 1.26874 0.95685 1.04608 0.90824 0.85095 0.78985 0.75987 0.79239 1.18987 1.18365 1.18741 1.19615 0.97146 0.92560 1.44381 0.91995 1.19153 0.93547 0.94210 0.91755 1.21794 1.05267 0.93577 1.23392 1.20460 0.95436 0.95776 0.99556 1.22681 0.96033 0.90192 0.92681 1.87853 1.89076 1.17399 1.39388 1.21195 0.94525 0.82246 0.96527 0.89675 0.92164 0.91456 0.93664 0.86782 0.94152 0.91991 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.21 10.37 21.89 0.23 -42.99 14 2 C 0.03 1.75 5.19 85.36 0.44 2.19 14 3 Si 0.99 39.14 29.59 68.60 2.03 41.17 14 4 H -0.27 -10.64 7.11 99.48 0.71 -9.93 14 5 H -0.26 -9.70 7.11 99.48 0.71 -8.99 14 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 14 7 C -0.51 -28.96 8.91 23.22 0.21 -28.75 14 8 H 0.06 3.55 7.89 -2.91 -0.02 3.53 14 9 C 0.02 0.88 5.64 -20.45 -0.12 0.76 14 10 C -0.42 -22.58 9.74 24.69 0.24 -22.34 14 11 C -0.08 -3.29 6.37 29.81 0.19 -3.10 14 12 C 0.06 2.50 6.86 72.02 0.49 2.99 14 13 O -0.42 -20.48 10.82 -148.98 -1.61 -22.09 14 14 C 0.13 6.98 5.03 71.11 0.36 7.34 14 15 H 0.29 13.47 8.29 -92.71 -0.77 12.70 14 16 H 0.06 3.33 8.00 -2.92 -0.02 3.30 14 17 H 0.07 2.58 8.14 -2.39 -0.02 2.57 14 18 H 0.04 1.89 8.14 -2.39 -0.02 1.87 14 19 H 0.11 3.72 8.14 -2.39 -0.02 3.70 14 20 H 0.04 1.66 8.09 -2.38 -0.02 1.64 14 21 H 0.06 3.41 6.95 -2.39 -0.02 3.39 14 22 H 0.07 4.00 7.63 -2.39 -0.02 3.98 14 Total: -1.00 -59.85 191.11 3.65 -56.20 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.19 Total: 8.62 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 1.82 Total: -40.90 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.23 Total: -42.99 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.61 Total: -22.09 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -59.85 3.65 -56.20 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983455.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.500 kcal (2) G-P(sol) polarization free energy of solvation -59.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds