Wall clock time and date at job start Mon Mar 30 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86796 * 120.00339 * 2 1 4 4 H 1.48501 * 109.47173 * 240.00005 * 3 2 1 5 5 H 1.48497 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47241 * 120.00087 * 3 2 1 7 7 C 1.40312 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99731 * 179.97438 * 7 2 1 9 9 C 1.40069 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.35032 * 119.99928 * 179.72230 * 9 7 2 11 11 C 1.52171 * 127.08707 * 359.97438 * 10 9 7 12 12 C 1.55167 * 103.05043 * 157.79705 * 11 10 9 13 13 N 1.48626 * 102.69311 * 37.43287 * 12 11 10 14 14 C 1.47893 * 105.34929 * 321.47506 * 13 12 11 15 15 H 0.97004 * 119.99793 * 359.97438 * 1 2 3 16 16 H 1.08002 * 120.00338 * 0.02562 * 9 7 2 17 17 H 1.09004 * 110.68103 * 276.31022 * 11 10 9 18 18 H 1.08997 * 110.68561 * 39.47377 * 11 10 9 19 19 H 1.09004 * 110.96682 * 279.07234 * 12 11 10 20 20 H 1.08997 * 110.63441 * 155.65108 * 12 11 10 21 21 H 1.00899 * 111.00205 * 201.24377 * 13 12 11 22 22 H 1.09005 * 109.86483 * 265.39832 * 14 13 12 23 23 H 1.09005 * 109.97614 * 144.36468 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2760 2.7464 -0.0006 6 1 3.0947 1.6963 1.2125 7 6 2.0083 -1.2152 0.0005 8 1 3.0883 -1.2152 0.0001 9 6 1.3079 -2.4282 0.0016 10 6 1.9830 -3.5976 -0.0035 11 6 3.4930 -3.7854 -0.0113 12 6 3.6708 -5.2184 0.5568 13 7 2.5208 -5.9498 -0.0361 14 6 1.3929 -4.9936 -0.0093 15 1 -0.4850 0.8401 0.0004 16 1 0.2279 -2.4282 0.0016 17 1 3.8839 -3.7202 -1.0268 18 1 3.9755 -3.0528 0.6357 19 1 3.6078 -5.2171 1.6450 20 1 4.6153 -5.6490 0.2242 21 1 2.3052 -6.7784 0.4978 22 1 0.7978 -5.1479 0.8908 23 1 0.7693 -5.1285 -0.8931 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075958.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:37 Heat of formation + Delta-G solvation = -3.330113 kcal Electronic energy + Delta-G solvation = -7889.933737 eV Core-core repulsion = 6316.364273 eV Total energy + Delta-G solvation = -1573.569465 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.08051 -33.92163 -30.79080 -28.15089 -26.39874 -22.65089 -20.60148 -17.70593 -16.29922 -15.65145 -14.67119 -14.07068 -12.87595 -12.59478 -12.11833 -11.35961 -11.28304 -11.18573 -10.93796 -10.43541 -10.23746 -9.76750 -9.46162 -8.99476 -7.88915 -7.42694 -6.75676 -4.21508 2.97897 3.08510 3.12692 3.85053 3.97951 5.15956 5.41521 5.96046 6.04612 6.21141 6.42413 6.67454 6.87070 7.11087 7.14589 7.19499 7.29773 7.51741 7.86398 8.10240 8.47586 8.66546 9.06599 9.27664 10.28017 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.107976 B = 0.014467 C = 0.012977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.254074 B = 1934.920948 C = 2157.160416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.454 4.454 8 H 0.071 0.929 9 C 0.073 3.927 10 C -0.408 4.408 11 C -0.039 4.039 12 C 0.040 3.960 13 N -0.674 5.674 14 C 0.117 3.883 15 H 0.281 0.719 16 H 0.084 0.916 17 H 0.041 0.959 18 H 0.046 0.954 19 H 0.029 0.971 20 H 0.060 0.940 21 H 0.318 0.682 22 H 0.009 0.991 23 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 -1.851 1.302 3.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.484 4.484 8 H 0.090 0.910 9 C 0.052 3.948 10 C -0.412 4.412 11 C -0.076 4.076 12 C -0.089 4.089 13 N -0.301 5.301 14 C -0.012 4.012 15 H 0.092 0.908 16 H 0.102 0.898 17 H 0.060 0.940 18 H 0.065 0.935 19 H 0.048 0.952 20 H 0.079 0.921 21 H 0.131 0.869 22 H 0.027 0.973 23 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.996 -1.615 0.582 3.453 hybrid contribution 0.027 0.778 0.992 1.261 sum 3.023 -0.838 1.574 3.509 Atomic orbital electron populations 1.69557 1.07721 1.29614 1.37820 1.26129 0.94808 1.01780 0.91720 0.86286 0.79927 0.79995 0.79965 1.18897 1.20436 1.18956 1.19490 0.94717 0.90487 1.43673 0.91041 1.19196 0.96308 0.90614 0.88689 1.21326 0.92707 0.91761 1.35435 1.20762 0.96451 0.92508 0.97900 1.23028 0.93741 0.96207 0.95943 1.63196 1.06227 1.06980 1.53738 1.20868 0.91308 0.91914 0.97064 0.90795 0.89792 0.94034 0.93527 0.95232 0.92142 0.86934 0.97262 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.00 12.86 55.57 0.71 -21.29 14 2 C 0.07 1.88 5.50 -17.26 -0.09 1.79 14 3 Si 0.91 19.40 29.56 -169.99 -5.03 14.38 14 4 H -0.26 -5.56 7.11 56.52 0.40 -5.15 14 5 H -0.28 -5.73 7.11 56.52 0.40 -5.32 14 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 14 7 C -0.45 -12.54 8.83 -38.12 -0.34 -12.88 14 8 H 0.07 1.94 6.72 -52.49 -0.35 1.58 14 9 C 0.07 2.02 9.33 -40.03 -0.37 1.64 14 10 C -0.41 -10.49 6.28 -99.34 -0.62 -11.11 14 11 C -0.04 -0.90 6.13 -26.01 -0.16 -1.06 14 12 C 0.04 0.79 7.60 -1.72 -0.01 0.78 14 13 N -0.67 -13.59 7.55 -111.25 -0.84 -14.43 14 14 C 0.12 2.65 7.35 -4.01 -0.03 2.62 14 15 H 0.28 6.86 8.29 -40.82 -0.34 6.52 14 16 H 0.08 2.42 7.42 -52.49 -0.39 2.03 14 17 H 0.04 0.97 8.14 -51.93 -0.42 0.55 14 18 H 0.05 1.07 7.47 -51.93 -0.39 0.69 14 19 H 0.03 0.56 8.14 -51.93 -0.42 0.14 14 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 14 21 H 0.32 5.42 8.92 -39.29 -0.35 5.07 14 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 14 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 14 LS Contribution 201.84 15.07 3.04 3.04 Total: -1.00 -28.01 201.84 -6.47 -34.47 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.73 Total: 2.04 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -1.63 Total: -18.22 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.12 Total: -35.72 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -28.01 -6.47 -34.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075958.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.142 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds