Wall clock time and date at job start Mon Mar 30 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86796 * 120.00339 * 2 1 4 4 H 1.48501 * 109.47173 * 240.00005 * 3 2 1 5 5 H 1.48497 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47241 * 120.00087 * 3 2 1 7 7 C 1.40312 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99731 * 179.97438 * 7 2 1 9 9 C 1.40069 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.35032 * 119.99928 * 179.72230 * 9 7 2 11 11 C 1.52171 * 127.08707 * 359.97438 * 10 9 7 12 12 C 1.55167 * 103.05043 * 157.79705 * 11 10 9 13 13 N 1.48626 * 102.69311 * 37.43287 * 12 11 10 14 14 C 1.47893 * 105.34929 * 321.47506 * 13 12 11 15 15 H 0.97004 * 119.99793 * 359.97438 * 1 2 3 16 16 H 1.08002 * 120.00338 * 0.02562 * 9 7 2 17 17 H 1.09004 * 110.68103 * 276.31022 * 11 10 9 18 18 H 1.08997 * 110.68561 * 39.47377 * 11 10 9 19 19 H 1.09004 * 110.96682 * 279.07234 * 12 11 10 20 20 H 1.08997 * 110.63441 * 155.65108 * 12 11 10 21 21 H 1.00899 * 111.00205 * 201.24377 * 13 12 11 22 22 H 1.09005 * 109.86483 * 265.39832 * 14 13 12 23 23 H 1.09005 * 109.97614 * 144.36468 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2760 2.7464 -0.0006 6 1 3.0947 1.6963 1.2125 7 6 2.0083 -1.2152 0.0005 8 1 3.0883 -1.2152 0.0001 9 6 1.3079 -2.4282 0.0016 10 6 1.9830 -3.5976 -0.0035 11 6 3.4930 -3.7854 -0.0113 12 6 3.6708 -5.2184 0.5568 13 7 2.5208 -5.9498 -0.0361 14 6 1.3929 -4.9936 -0.0093 15 1 -0.4850 0.8401 0.0004 16 1 0.2279 -2.4282 0.0016 17 1 3.8839 -3.7202 -1.0268 18 1 3.9755 -3.0528 0.6357 19 1 3.6078 -5.2171 1.6450 20 1 4.6153 -5.6490 0.2242 21 1 2.3052 -6.7784 0.4978 22 1 0.7978 -5.1479 0.8908 23 1 0.7693 -5.1285 -0.8931 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075958.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:37 Heat of formation + Delta-G solvation = -22.630393 kcal Electronic energy + Delta-G solvation = -7890.770660 eV Core-core repulsion = 6316.364273 eV Total energy + Delta-G solvation = -1574.406388 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.86413 -35.90386 -32.75204 -29.91913 -28.33513 -24.62297 -22.30851 -19.66022 -18.34960 -17.41625 -16.44183 -15.78244 -14.83264 -14.37119 -13.95338 -13.17519 -13.02488 -12.91990 -12.68286 -12.21950 -12.05891 -11.66415 -11.36988 -11.00522 -9.66264 -9.35264 -8.71776 -6.28838 1.24491 1.36810 1.49652 1.91475 2.20579 3.33075 3.55815 4.27515 4.34673 4.51293 4.74124 4.89007 5.01903 5.11754 5.21482 5.30928 5.38869 5.71513 5.91617 6.41594 6.55709 6.64433 7.00661 7.19672 8.34198 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.107976 B = 0.014467 C = 0.012977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.254074 B = 1934.920948 C = 2157.160416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.486 4.486 8 H 0.070 0.930 9 C 0.041 3.959 10 C -0.415 4.415 11 C -0.044 4.044 12 C 0.048 3.952 13 N -0.673 5.673 14 C 0.117 3.883 15 H 0.291 0.709 16 H 0.061 0.939 17 H 0.036 0.964 18 H 0.042 0.958 19 H 0.040 0.960 20 H 0.091 0.909 21 H 0.340 0.660 22 H 0.016 0.984 23 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.209 -1.873 1.565 4.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.516 4.516 8 H 0.088 0.912 9 C 0.021 3.979 10 C -0.419 4.419 11 C -0.082 4.082 12 C -0.081 4.081 13 N -0.302 5.302 14 C -0.012 4.012 15 H 0.102 0.898 16 H 0.079 0.921 17 H 0.055 0.945 18 H 0.060 0.940 19 H 0.059 0.941 20 H 0.109 0.891 21 H 0.155 0.845 22 H 0.034 0.966 23 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.168 -1.673 0.851 4.571 hybrid contribution -0.370 0.676 0.906 1.189 sum 3.798 -0.996 1.757 4.302 Atomic orbital electron populations 1.69616 1.09261 1.31230 1.38015 1.27069 0.95676 1.05310 0.90581 0.85139 0.78611 0.75090 0.80170 1.18362 1.18917 1.18221 1.19688 0.94777 0.91522 1.45578 0.91179 1.19248 0.95386 0.92142 0.91134 1.21859 0.94722 0.92579 1.32745 1.20818 0.94469 0.95034 0.97862 1.23018 0.94799 0.93766 0.96477 1.63133 1.05258 1.07120 1.54659 1.20795 0.92190 0.90981 0.97204 0.89834 0.92120 0.94525 0.93967 0.94117 0.89121 0.84506 0.96598 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.44 12.86 21.89 0.28 -46.16 14 2 C 0.03 1.41 5.50 85.37 0.47 1.88 14 3 Si 0.99 39.35 29.56 68.60 2.03 41.38 14 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 14 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 14 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 14 7 C -0.49 -27.38 8.83 23.22 0.21 -27.18 14 8 H 0.07 3.85 6.72 -2.91 -0.02 3.83 14 9 C 0.04 2.37 9.33 21.98 0.21 2.58 14 10 C -0.41 -21.40 6.28 -16.44 -0.10 -21.50 14 11 C -0.04 -2.01 6.13 31.06 0.19 -1.82 14 12 C 0.05 1.77 7.60 86.71 0.66 2.43 14 13 N -0.67 -25.29 7.55 -505.88 -3.82 -29.11 14 14 C 0.12 5.21 7.35 85.64 0.63 5.84 14 15 H 0.29 14.22 8.29 -92.71 -0.77 13.45 14 16 H 0.06 3.66 7.42 -2.91 -0.02 3.64 14 17 H 0.04 1.68 8.14 -2.39 -0.02 1.66 14 18 H 0.04 1.92 7.47 -2.39 -0.02 1.90 14 19 H 0.04 1.41 8.14 -2.38 -0.02 1.39 14 20 H 0.09 2.82 8.14 -2.39 -0.02 2.80 14 21 H 0.34 10.46 8.92 -89.69 -0.80 9.66 14 22 H 0.02 0.68 8.14 -2.38 -0.02 0.66 14 23 H 0.04 1.98 8.14 -2.38 -0.02 1.96 14 Total: -1.00 -59.52 201.84 1.14 -58.38 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.40 Total: 13.29 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 2.26 Total: -37.78 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -3.54 Total: -75.27 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -59.52 1.14 -58.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075958.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.745 kcal (2) G-P(sol) polarization free energy of solvation -59.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds