Wall clock time and date at job start Mon Mar 30 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48117 * 110.99787 * 2 1 4 4 C 1.51173 * 105.54829 * 213.91914 * 3 2 1 5 5 C 1.35183 * 108.76554 * 17.29328 * 4 3 2 6 6 C 1.40069 * 125.61549 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00338 * 180.02562 * 6 5 4 8 8 C 1.40314 * 120.00076 * 359.74864 * 6 5 4 9 9 N 1.30694 * 119.99479 * 0.27878 * 8 6 5 10 10 Si 1.86794 * 120.00008 * 180.27737 * 8 6 5 11 11 H 1.48496 * 109.47337 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47121 * 120.00607 * 10 8 6 13 13 H 1.48506 * 109.46825 * 240.00283 * 10 8 6 14 14 C 1.48278 * 110.86728 * 245.78636 * 2 1 3 15 15 H 1.09002 * 109.47199 * 59.88038 * 1 2 3 16 16 H 1.09002 * 109.47438 * 179.87470 * 1 2 3 17 17 H 1.08994 * 109.47638 * 299.87794 * 1 2 3 18 18 H 1.08995 * 110.23783 * 94.89638 * 3 2 1 19 19 H 1.09007 * 110.30163 * 332.97269 * 3 2 1 20 20 H 1.07995 * 125.61449 * 197.33398 * 4 3 2 21 21 H 0.97005 * 119.99603 * 179.97438 * 9 8 6 22 22 H 1.09001 * 110.37773 * 27.25020 * 14 2 1 23 23 H 1.08996 * 110.17105 * 265.22499 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3828 0.0000 4 6 3.2733 1.3281 -0.8127 5 6 3.2733 0.1918 -1.5450 6 6 4.2862 -0.2120 -2.4242 7 1 4.1921 -1.1414 -2.9663 8 6 5.4205 0.5939 -2.6052 9 7 5.5344 1.7185 -1.9493 10 14 6.7677 0.0592 -3.7836 11 1 6.4010 -1.2426 -4.3968 12 1 6.9278 1.0812 -4.8490 13 1 8.0456 -0.0864 -3.0412 14 6 1.9972 -0.5683 -1.2636 15 1 -0.3634 0.5157 -0.8889 16 1 -0.3634 -1.0277 -0.0022 17 1 -0.3634 0.5119 0.8910 18 1 2.2164 1.7035 1.0189 19 1 1.2851 2.0623 -0.4646 20 1 4.0546 2.0736 -0.8084 21 1 6.3188 2.2755 -2.0741 22 1 1.2836 -0.4197 -2.0741 23 1 2.2107 -1.6297 -1.1381 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260353820.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:15 Heat of formation + Delta-G solvation = 20.376135 kcal Electronic energy + Delta-G solvation = -8087.908217 eV Core-core repulsion = 6515.366732 eV Total energy + Delta-G solvation = -1572.541485 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.81442 -33.74095 -30.47688 -27.68437 -25.79267 -23.54395 -19.98457 -18.64287 -16.09167 -15.03985 -14.45535 -14.06917 -12.93215 -12.64461 -11.79889 -11.65516 -11.43852 -11.19814 -10.78003 -10.45164 -9.97383 -9.69287 -9.39618 -9.32405 -7.92582 -6.93231 -6.29881 -4.17249 3.06978 3.18392 3.23403 4.10580 4.10995 5.09069 5.41118 5.76726 5.96413 6.23467 6.27707 6.61281 6.62709 6.79963 6.93207 7.14721 7.46620 7.74232 8.03821 8.12208 8.61762 9.11138 9.30495 9.40651 10.51453 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.128341 B = 0.016158 C = 0.014626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 218.115668 B = 1732.435899 C = 1913.985653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.519 5.519 3 C 0.085 3.915 4 C -0.361 4.361 5 C 0.010 3.990 6 C -0.433 4.433 7 H 0.066 0.934 8 C 0.058 3.942 9 N -0.802 5.802 10 Si 0.913 3.087 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.066 3.934 15 H 0.020 0.980 16 H 0.058 0.942 17 H 0.058 0.942 18 H 0.047 0.953 19 H 0.013 0.987 20 H 0.160 0.840 21 H 0.270 0.730 22 H 0.032 0.968 23 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 -1.367 -0.370 3.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.242 5.242 3 C -0.042 4.042 4 C -0.385 4.385 5 C 0.008 3.992 6 C -0.465 4.465 7 H 0.084 0.916 8 C -0.155 4.155 9 N -0.430 5.430 10 Si 0.739 3.261 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.202 1.202 14 C -0.062 4.062 15 H 0.038 0.962 16 H 0.076 0.924 17 H 0.077 0.923 18 H 0.066 0.934 19 H 0.030 0.970 20 H 0.177 0.823 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.726 -1.515 0.129 3.122 hybrid contribution 0.194 0.248 -1.201 1.241 sum -2.533 -1.267 -1.071 3.028 Atomic orbital electron populations 1.22498 0.90253 1.00728 0.99761 1.65430 1.06081 1.18009 1.34711 1.21672 0.96651 0.87183 0.98666 1.24215 0.99928 1.05077 1.09260 1.18971 0.91198 0.93802 0.95226 1.18908 1.01290 1.05207 1.21095 0.91592 1.25802 0.99072 0.94412 0.96189 1.69590 1.27160 1.10621 1.35674 0.86180 0.80434 0.79358 0.80138 1.18866 1.20295 1.20222 1.21902 0.96455 0.98870 0.88937 0.96161 0.92358 0.92317 0.93443 0.96951 0.82285 0.91824 0.95041 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.35 60.07 0.56 0.87 14 2 N -0.52 -11.96 5.82 -242.96 -1.41 -13.38 14 3 C 0.09 2.07 6.63 -4.07 -0.03 2.05 14 4 C -0.36 -10.18 10.01 -35.16 -0.35 -10.53 14 5 C 0.01 0.29 5.99 -104.79 -0.63 -0.34 14 6 C -0.43 -12.24 9.39 -38.11 -0.36 -12.60 14 7 H 0.07 1.77 7.85 -52.49 -0.41 1.35 14 8 C 0.06 1.57 5.50 -17.26 -0.09 1.48 14 9 N -0.80 -22.29 10.16 55.57 0.56 -21.73 14 10 Si 0.91 20.00 29.56 -169.99 -5.03 14.98 14 11 H -0.26 -5.69 7.11 56.52 0.40 -5.28 14 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 14 13 H -0.28 -5.97 7.11 56.52 0.40 -5.56 14 14 C 0.07 1.60 6.56 -3.98 -0.03 1.58 14 15 H 0.02 0.36 7.89 -51.93 -0.41 -0.05 14 16 H 0.06 0.95 8.14 -51.93 -0.42 0.52 14 17 H 0.06 0.96 8.14 -51.93 -0.42 0.54 14 18 H 0.05 1.11 8.14 -51.93 -0.42 0.68 14 19 H 0.01 0.29 7.77 -51.92 -0.40 -0.11 14 20 H 0.16 4.75 5.42 -52.49 -0.28 4.47 14 21 H 0.27 6.84 8.29 -40.82 -0.34 6.50 14 22 H 0.03 0.73 7.68 -51.93 -0.40 0.33 14 23 H 0.06 1.44 8.14 -51.93 -0.42 1.01 14 LS Contribution 197.76 15.07 2.98 2.98 Total: -1.00 -29.23 197.76 -6.55 -35.79 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -2.73 Total: -1.15 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -0.92 Total: -17.49 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.85 Total: -35.11 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -29.23 -6.55 -35.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353820.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.162 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds