Wall clock time and date at job start Mon Mar 30 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00418 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00282 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99904 * 3 2 1 7 7 C 1.38798 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00037 * 0.02562 * 7 2 1 9 9 N 1.36871 * 120.00324 * 180.02562 * 7 2 1 10 10 C 1.37983 * 120.00036 * 180.27862 * 9 7 2 11 11 C 1.36848 * 126.91428 * 179.43416 * 10 9 7 12 12 C 1.40840 * 103.90144 * 179.87147 * 11 10 9 13 13 N 1.30381 * 106.57876 * 0.39147 * 12 11 10 14 14 O 1.20905 * 111.88816 * 359.74199 * 13 12 11 15 15 H 0.96999 * 120.00271 * 359.97438 * 1 2 3 16 16 H 0.97001 * 119.99649 * 359.97438 * 9 7 2 17 17 H 1.08006 * 128.04308 * 359.97438 * 11 10 9 18 18 H 1.08000 * 126.71055 * 180.12081 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0097 -1.2020 -0.0005 8 1 1.4698 -2.1373 -0.0014 9 7 3.3784 -1.2019 0.0000 10 6 4.0684 -2.3969 -0.0064 11 6 5.4268 -2.5615 -0.0175 12 6 5.5983 -3.9595 -0.0167 13 7 4.4032 -4.4808 -0.0143 14 8 3.5415 -3.6327 -0.0085 15 1 -0.4850 0.8400 0.0004 16 1 3.8633 -0.3618 0.0004 17 1 6.1899 -1.7972 -0.0237 18 1 6.5362 -4.4949 -0.0219 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260384035.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:24 Heat of formation + Delta-G solvation = 66.264111 kcal Electronic energy + Delta-G solvation = -7918.846331 eV Core-core repulsion = 6147.035693 eV Total energy + Delta-G solvation = -1771.810638 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -43.44177 -35.95012 -32.65507 -32.15957 -28.93826 -24.51308 -22.35636 -20.50013 -18.34956 -17.36360 -16.31931 -14.82416 -14.77220 -13.48185 -13.00839 -12.30460 -11.82025 -11.73768 -10.90550 -10.79808 -10.22878 -10.19475 -9.42761 -9.01693 -7.27573 -6.52937 -3.93527 2.73983 2.96698 3.02303 3.05197 3.41750 3.76664 3.95393 4.97926 5.23058 5.38464 6.24282 6.31071 6.50892 7.10368 7.37443 7.78218 8.41366 8.92336 9.06757 9.61793 10.58893 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.109886 B = 0.017574 C = 0.015232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 254.747238 B = 1592.842441 C = 1837.743427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.882 3.118 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.321 4.321 8 H 0.119 0.881 9 N -0.545 5.545 10 C 0.265 3.735 11 C -0.409 4.409 12 C 0.029 3.971 13 N -0.421 5.421 14 O 0.040 5.960 15 H 0.278 0.722 16 H 0.400 0.600 17 H 0.146 0.854 18 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 1.279 -0.026 7.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.159 4.159 3 Si 0.708 3.292 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.450 4.450 8 H 0.136 0.864 9 N -0.170 5.170 10 C 0.090 3.910 11 C -0.445 4.445 12 C -0.149 4.149 13 N -0.145 5.145 14 O -0.004 6.004 15 H 0.088 0.912 16 H 0.238 0.762 17 H 0.164 0.836 18 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.353 0.179 -0.025 6.356 hybrid contribution 1.055 2.022 0.018 2.281 sum 7.408 2.201 -0.006 7.728 Atomic orbital electron populations 1.69672 1.05543 1.28082 1.47612 1.24952 0.95594 0.98262 0.97117 0.86588 0.79832 0.83525 0.79280 1.19199 1.19676 1.19217 1.19439 0.78639 0.97124 1.49750 0.86383 1.40120 1.06462 1.01067 1.69362 1.20654 0.89041 0.83292 0.98021 1.21106 0.93097 0.96513 1.33744 1.24110 0.96547 0.92925 1.01366 1.73726 0.98834 1.13764 1.28184 1.84793 1.31715 1.10347 1.73526 0.91162 0.76184 0.83582 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.27 13.96 55.49 0.77 -23.50 13 2 C 0.05 1.20 5.50 -17.46 -0.10 1.10 13 3 Si 0.88 18.69 27.73 -169.99 -4.71 13.98 13 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 13 5 H -0.27 -5.75 7.11 56.52 0.40 -5.34 13 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 13 7 C -0.32 -8.58 10.32 -15.10 -0.16 -8.73 13 8 H 0.12 3.46 7.72 -52.49 -0.41 3.06 13 9 N -0.55 -12.83 5.21 -11.55 -0.06 -12.89 13 10 C 0.27 6.13 7.96 -15.29 -0.12 6.00 13 11 C -0.41 -8.20 11.20 -39.10 -0.44 -8.64 13 12 C 0.03 0.55 12.15 -17.18 -0.21 0.34 13 13 N -0.42 -9.51 12.06 30.44 0.37 -9.14 13 14 O 0.04 0.98 10.72 16.35 0.18 1.16 13 15 H 0.28 7.13 8.31 -40.82 -0.34 6.79 13 16 H 0.40 8.44 5.87 -40.82 -0.24 8.20 13 17 H 0.15 2.51 8.06 -52.48 -0.42 2.08 13 18 H 0.17 2.52 8.06 -52.49 -0.42 2.09 13 LS Contribution 175.56 15.07 2.65 2.65 Total: -1.00 -28.33 175.56 -2.49 -30.82 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -0.66 Total: 6.84 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.02 Total: -9.92 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 1.08 Total: -45.53 kcal Atomic # 8 Polarization: 0.98 SS G_CDS: 0.18 Total: 1.16 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.98 kcal Total LS contribution 2.65 Total: 2.65 kcal Total: -28.33 -2.49 -30.82 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384035.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.087 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds