Wall clock time and date at job start Mon Mar 30 2020 01:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09001 * 110.67202 * 57.04973 * 9 7 2 11 11 C 1.54889 * 110.75698 * 180.27696 * 9 7 2 12 12 C 1.54267 * 104.19656 * 156.26012 * 11 9 7 13 13 H 1.08997 * 117.41196 * 196.41218 * 12 11 9 14 14 C 1.53001 * 118.19706 * 41.78433 * 12 11 9 15 15 C 1.53879 * 106.59776 * 336.39084 * 12 11 9 16 16 H 1.08998 * 121.32750 * 221.36751 * 15 12 11 17 17 C 1.54268 * 106.59811 * 0.02562 * 15 12 11 18 18 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 19 19 H 1.08999 * 110.49315 * 274.94127 * 11 9 7 20 20 H 1.09005 * 110.48613 * 37.58281 * 11 9 7 21 21 H 1.08999 * 117.46163 * 13.98157 * 14 12 11 22 22 H 1.09004 * 117.45789 * 158.80903 * 14 12 11 23 23 H 1.08996 * 110.48372 * 264.93337 * 17 15 12 24 24 H 1.09001 * 110.48380 * 142.28868 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.5747 -2.5567 -0.8474 11 6 2.2310 -3.6986 0.0106 12 6 1.4103 -4.8550 0.6180 13 1 1.9592 -5.7258 0.9762 14 6 -0.0461 -5.0169 0.1778 15 6 0.2969 -4.2085 1.4608 16 1 0.0195 -4.6087 2.4360 17 6 0.4797 -2.6818 1.3357 18 1 -0.4850 0.8400 0.0004 19 1 2.5404 -3.9430 -1.0056 20 1 3.0992 -3.4793 0.6323 21 1 -0.3687 -4.4650 -0.7050 22 1 -0.5067 -5.9953 0.3145 23 1 1.0651 -2.2979 2.1712 24 1 -0.4890 -2.1844 1.2869 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389997.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:31 Heat of formation + Delta-G solvation = -5.768872 kcal Electronic energy + Delta-G solvation = -8091.249868 eV Core-core repulsion = 6583.000562 eV Total energy + Delta-G solvation = -1508.249306 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.07374 -35.00202 -31.73791 -28.77574 -26.99655 -23.54737 -20.39321 -20.20044 -18.49481 -16.75519 -16.08410 -15.54070 -14.30323 -14.03216 -13.67487 -13.05931 -12.85114 -12.59595 -12.28893 -11.95428 -11.67571 -11.03959 -10.98151 -10.68827 -10.50950 -10.18809 -8.13055 -6.23713 1.40707 1.42660 1.50379 2.42948 2.92803 3.17566 3.85506 4.02061 4.23910 4.53633 4.66944 4.90551 4.96269 5.03035 5.07274 5.24240 5.29441 5.48871 5.57256 5.62138 5.90319 5.97162 6.37289 6.87317 7.43920 8.96127 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.110095 B = 0.017403 C = 0.016194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 254.264679 B = 1608.552135 C = 1728.626119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.035 3.965 10 H 0.000 1.000 11 C -0.089 4.089 12 C -0.161 4.161 13 H 0.126 0.874 14 C -0.153 4.153 15 C -0.180 4.180 16 H 0.118 0.882 17 C -0.071 4.071 18 H 0.261 0.739 19 H 0.051 0.949 20 H 0.059 0.941 21 H 0.070 0.930 22 H 0.123 0.877 23 H 0.039 0.961 24 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -6.244 1.664 6.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.017 3.983 10 H 0.018 0.982 11 C -0.126 4.126 12 C -0.179 4.179 13 H 0.143 0.857 14 C -0.190 4.190 15 C -0.198 4.198 16 H 0.136 0.864 17 C -0.109 4.109 18 H 0.069 0.931 19 H 0.070 0.930 20 H 0.078 0.922 21 H 0.089 0.911 22 H 0.141 0.859 23 H 0.057 0.943 24 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.621 -6.117 1.669 6.545 hybrid contribution 0.191 1.155 -0.044 1.172 sum 1.812 -4.962 1.625 5.527 Atomic orbital electron populations 1.70094 1.07375 1.27341 1.51235 1.25826 0.95704 1.02642 0.94682 0.85631 0.78382 0.78825 0.78943 1.19499 1.20931 1.19491 1.21508 0.93038 0.92100 1.50888 0.92763 1.19557 0.93221 0.92599 0.92951 0.98182 1.21964 0.97840 0.93753 0.99080 1.23228 0.90611 0.99722 1.04294 0.85651 1.23285 0.97470 1.01072 0.97170 1.23705 1.05795 0.94425 0.95904 0.86401 1.21699 0.98781 0.91823 0.98630 0.93051 0.92998 0.92189 0.91137 0.85869 0.94259 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.41 12.40 21.45 0.27 -55.14 14 2 C 0.01 0.58 5.36 84.65 0.45 1.03 14 3 Si 0.96 44.61 29.54 68.60 2.03 46.64 14 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 14 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 14 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 14 7 C -0.54 -30.82 8.49 25.60 0.22 -30.60 14 8 H 0.05 3.03 7.77 -2.91 -0.02 3.00 14 9 C 0.04 1.85 2.25 -10.26 -0.02 1.83 14 10 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 14 11 C -0.09 -3.82 6.18 31.67 0.20 -3.63 14 12 C -0.16 -5.74 6.97 -10.07 -0.07 -5.82 14 13 H 0.13 3.66 8.14 -2.39 -0.02 3.64 14 14 C -0.15 -5.29 9.94 31.45 0.31 -4.98 14 15 C -0.18 -6.97 7.16 -9.22 -0.07 -7.03 14 16 H 0.12 3.92 8.14 -2.39 -0.02 3.90 14 17 C -0.07 -3.53 5.69 31.66 0.18 -3.35 14 18 H 0.26 14.88 8.31 -92.71 -0.77 14.11 14 19 H 0.05 2.13 8.14 -2.39 -0.02 2.11 14 20 H 0.06 2.54 8.03 -2.38 -0.02 2.52 14 21 H 0.07 2.75 7.27 -2.39 -0.02 2.73 14 22 H 0.12 3.29 8.14 -2.38 -0.02 3.28 14 23 H 0.04 1.99 8.04 -2.39 -0.02 1.97 14 24 H 0.03 1.84 7.63 -2.39 -0.02 1.83 14 Total: -1.00 -61.80 202.35 4.65 -57.15 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.16 Total: 3.91 kcal Atomic # 6 Polarization: -53.74 SS G_CDS: 1.20 Total: -52.54 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.27 Total: -55.14 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -61.80 4.65 -57.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389997.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.376 kcal (2) G-P(sol) polarization free energy of solvation -61.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds