Wall clock time and date at job start Mon Mar 30 2020 02:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09008 * 115.52445 * 325.91796 * 9 7 2 11 11 C 1.52943 * 117.45573 * 180.49312 * 9 7 2 12 12 H 1.08996 * 119.49332 * 4.10470 * 11 9 7 13 13 C 1.54558 * 118.20029 * 160.64916 * 11 9 7 14 14 C 1.54935 * 102.94458 * 85.57072 * 13 11 9 15 15 N 1.48529 * 103.22801 * 322.53562 * 14 13 11 16 16 C 1.47942 * 105.80287 * 39.14773 * 15 14 13 17 17 H 1.09000 * 117.37766 * 116.20456 * 16 15 14 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09003 * 110.72193 * 327.20458 * 13 11 9 20 20 H 1.09004 * 110.71803 * 203.93792 * 13 11 9 21 21 H 1.08990 * 110.67033 * 204.10213 * 14 13 11 22 22 H 1.09000 * 110.80664 * 81.03624 * 14 13 11 23 23 H 1.00900 * 111.00098 * 278.64314 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.3108 -2.4987 0.5511 11 6 2.0737 -3.7884 0.0105 12 1 3.1596 -3.7315 0.0859 13 6 1.3800 -5.0936 0.4623 14 6 0.7145 -5.6021 -0.8412 15 7 0.2561 -4.3517 -1.4988 16 6 1.3267 -3.3578 -1.2654 17 1 1.8532 -2.9736 -2.1391 18 1 -0.4850 0.8401 0.0004 19 1 0.6282 -4.8871 1.2240 20 1 2.1128 -5.8133 0.8275 21 1 -0.1320 -6.2497 -0.6136 22 1 1.4384 -6.1232 -1.4677 23 1 -0.6199 -4.0381 -1.1085 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260426765.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:11 Heat of formation + Delta-G solvation = 23.843773 kcal Electronic energy + Delta-G solvation = -8059.458223 eV Core-core repulsion = 6487.067106 eV Total energy + Delta-G solvation = -1572.391117 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.60714 -33.03980 -30.80130 -28.49925 -25.42595 -21.52406 -19.96475 -19.01296 -16.63561 -15.16168 -14.73568 -14.05763 -13.16270 -12.45531 -12.04379 -11.50954 -11.29594 -10.96658 -10.90427 -10.48352 -10.20675 -9.42324 -9.25061 -8.61811 -8.30048 -7.70029 -6.15408 -4.15584 3.27392 3.32058 3.34713 4.33503 4.72559 5.15916 5.32624 5.52747 5.73039 5.90852 6.17474 6.33217 6.47781 6.55056 6.62583 6.83073 7.22527 7.51823 7.64685 7.81930 8.10795 8.38576 8.86066 9.44943 10.94926 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.117610 B = 0.015509 C = 0.014805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 238.016998 B = 1804.921453 C = 1890.769597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.053 3.947 10 H 0.073 0.927 11 C -0.221 4.221 12 H 0.093 0.907 13 C -0.124 4.124 14 C 0.045 3.955 15 N -0.655 5.655 16 C -0.034 4.034 17 H 0.111 0.889 18 H 0.265 0.735 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -5.219 0.330 5.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.034 3.966 10 H 0.091 0.909 11 C -0.241 4.241 12 H 0.111 0.889 13 C -0.163 4.163 14 C -0.085 4.085 15 N -0.282 5.282 16 C -0.144 4.144 17 H 0.129 0.871 18 H 0.075 0.925 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.318 -5.286 -0.396 5.463 hybrid contribution 0.448 0.972 0.908 1.404 sum 1.767 -4.314 0.512 4.690 Atomic orbital electron populations 1.69953 1.06178 1.27251 1.48445 1.25059 0.94914 0.99503 0.94049 0.86520 0.79549 0.82310 0.78848 1.21059 1.20007 1.19955 1.20576 0.92702 0.89168 1.51197 0.92150 1.20384 0.95850 0.87884 0.92495 0.90915 1.23789 0.98433 0.96483 1.05400 0.88908 1.22668 0.99247 0.96439 0.97989 1.23221 0.98469 0.93605 0.93209 1.62423 1.05204 1.03136 1.57465 1.24180 0.96259 1.01615 0.92351 0.87134 0.92539 0.92238 0.92231 0.92027 0.91173 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.12 55.43 0.73 -24.95 14 2 C 0.07 1.92 5.46 -17.82 -0.10 1.83 14 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 14 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 14 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 14 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 14 7 C -0.50 -14.02 9.20 -34.44 -0.32 -14.34 14 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 14 9 C 0.05 1.39 5.18 -91.77 -0.48 0.92 14 10 H 0.07 2.03 7.89 -51.92 -0.41 1.62 14 11 C -0.22 -4.94 6.75 -89.31 -0.60 -5.55 14 12 H 0.09 2.05 8.14 -51.93 -0.42 1.63 14 13 C -0.12 -2.30 6.85 -24.89 -0.17 -2.47 14 14 C 0.04 0.78 7.55 -1.90 -0.01 0.77 14 15 N -0.66 -13.64 7.49 -103.08 -0.77 -14.41 14 16 C -0.03 -0.80 7.24 -66.59 -0.48 -1.28 14 17 H 0.11 2.72 8.14 -51.93 -0.42 2.29 14 18 H 0.26 7.27 8.31 -40.82 -0.34 6.93 14 19 H 0.06 1.10 8.14 -51.93 -0.42 0.68 14 20 H 0.06 0.97 8.14 -51.93 -0.42 0.54 14 21 H 0.06 0.93 8.14 -51.93 -0.42 0.50 14 22 H 0.07 1.18 8.14 -51.93 -0.42 0.75 14 23 H 0.33 6.86 8.82 -39.29 -0.35 6.51 14 LS Contribution 201.38 15.07 3.03 3.03 Total: -1.00 -28.66 201.38 -7.03 -35.69 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -2.84 Total: 4.61 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.16 Total: -20.12 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.04 Total: -39.36 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.03 Total: 3.03 kcal Total: -28.66 -7.03 -35.69 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260426765.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.534 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds