Wall clock time and date at job start Mon Mar 30 2020 01:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08998 * 115.52288 * 325.30202 * 9 7 2 11 11 C 1.52998 * 117.46012 * 179.80541 * 9 7 2 12 12 H 1.08998 * 119.29802 * 4.64525 * 11 9 7 13 13 C 1.54270 * 118.19659 * 158.78160 * 11 9 7 14 14 C 1.54893 * 104.19190 * 87.79186 * 13 11 9 15 15 C 1.54892 * 102.74883 * 322.05490 * 14 13 11 16 16 C 1.52996 * 117.46197 * 110.79904 * 9 7 2 17 17 H 1.09004 * 119.29708 * 356.29114 * 16 9 7 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09001 * 110.48446 * 206.46687 * 13 11 9 20 20 H 1.08997 * 110.48711 * 328.98204 * 13 11 9 21 21 H 1.08997 * 110.75519 * 80.37355 * 14 13 11 22 22 H 1.08999 * 110.75456 * 203.55296 * 14 13 11 23 23 H 1.09003 * 110.48104 * 156.61996 * 15 14 13 24 24 H 1.08994 * 110.48314 * 279.13520 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.3134 -2.5027 0.5505 11 6 2.0738 -3.7891 -0.0091 12 1 3.1593 -3.7294 0.0696 13 6 1.3967 -5.0871 0.4773 14 6 0.7251 -5.6642 -0.7936 15 6 0.2116 -4.3938 -1.5158 16 6 1.3210 -3.3487 -1.2759 17 1 1.8530 -2.9640 -2.1461 18 1 -0.4850 0.8401 -0.0004 19 1 2.1404 -5.7831 0.8653 20 1 0.6492 -4.8652 1.2389 21 1 1.4534 -6.1913 -1.4099 22 1 -0.1023 -6.3223 -0.5283 23 1 0.0906 -4.5840 -2.5823 24 1 -0.7300 -4.0612 -1.0792 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429181.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:19 Heat of formation + Delta-G solvation = -11.239302 kcal Electronic energy + Delta-G solvation = -7946.000386 eV Core-core repulsion = 6437.513864 eV Total energy + Delta-G solvation = -1508.486522 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.96098 -34.88896 -32.17788 -28.92074 -27.40822 -22.68825 -21.00374 -20.28947 -18.70998 -16.76643 -16.08529 -15.52132 -14.34357 -13.90202 -13.68001 -13.07276 -12.88187 -12.50686 -12.22770 -11.93980 -11.84820 -11.60495 -11.18399 -11.00484 -10.14702 -10.06964 -8.23325 -6.30373 1.39051 1.40110 1.51933 2.37674 2.91614 3.41689 3.93595 4.16785 4.25667 4.63276 4.70153 4.79690 4.81982 4.97052 5.01656 5.15654 5.25924 5.31607 5.50439 5.60250 5.64453 5.78081 6.34418 6.77181 7.32852 8.88180 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.114791 B = 0.015439 C = 0.014740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 243.863060 B = 1813.161066 C = 1899.082838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.020 3.980 10 H 0.041 0.959 11 C -0.188 4.188 12 H 0.086 0.914 13 C -0.090 4.090 14 C -0.109 4.109 15 C -0.091 4.091 16 C -0.197 4.197 17 H 0.075 0.925 18 H 0.266 0.734 19 H 0.081 0.919 20 H 0.052 0.948 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 -6.673 -1.089 7.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.073 0.927 9 C 0.002 3.998 10 H 0.059 0.941 11 C -0.207 4.207 12 H 0.104 0.896 13 C -0.127 4.127 14 C -0.146 4.146 15 C -0.128 4.128 16 C -0.216 4.216 17 H 0.093 0.907 18 H 0.075 0.925 19 H 0.100 0.900 20 H 0.071 0.929 21 H 0.096 0.904 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.683 -6.570 -1.085 6.868 hybrid contribution 0.313 1.096 -0.085 1.143 sum 1.995 -5.474 -1.169 5.942 Atomic orbital electron populations 1.70101 1.07731 1.27928 1.50320 1.25942 0.95795 1.03115 0.93852 0.85397 0.78625 0.78136 0.78558 1.19729 1.20247 1.18883 1.21043 0.92751 0.91110 1.51035 0.92674 1.19886 0.95683 0.89027 0.95210 0.94061 1.23400 0.97390 0.96290 1.03587 0.89578 1.21930 0.98953 0.94274 0.97564 1.22603 1.00108 0.96201 0.95733 1.21901 0.96347 0.94273 1.00327 1.23505 1.01494 1.04382 0.92181 0.90687 0.92543 0.90041 0.92929 0.90399 0.89906 0.91032 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.22 13.13 21.45 0.28 -55.94 14 2 C 0.01 0.71 5.46 84.66 0.46 1.18 14 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 14 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 14 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 14 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 14 7 C -0.52 -30.73 9.20 25.60 0.24 -30.50 14 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 14 9 C 0.02 1.12 5.12 -11.54 -0.06 1.06 14 10 H 0.04 2.48 7.90 -2.39 -0.02 2.46 14 11 C -0.19 -8.40 6.64 -10.09 -0.07 -8.46 14 12 H 0.09 3.80 8.14 -2.39 -0.02 3.78 14 13 C -0.09 -3.15 6.63 31.67 0.21 -2.94 14 14 C -0.11 -3.35 6.91 31.89 0.22 -3.13 14 15 C -0.09 -3.46 6.63 31.68 0.21 -3.25 14 16 C -0.20 -9.25 6.64 -10.09 -0.07 -9.32 14 17 H 0.07 3.65 8.14 -2.38 -0.02 3.63 14 18 H 0.27 15.10 8.31 -92.70 -0.77 14.33 14 19 H 0.08 2.40 8.14 -2.39 -0.02 2.38 14 20 H 0.05 1.91 8.14 -2.39 -0.02 1.89 14 21 H 0.08 2.12 8.14 -2.39 -0.02 2.10 14 22 H 0.08 2.12 8.14 -2.39 -0.02 2.10 14 23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 14 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 14 Total: -1.00 -63.29 206.37 4.61 -58.69 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.15 Total: 5.99 kcal Atomic # 6 Polarization: -56.52 SS G_CDS: 1.14 Total: -55.37 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.28 Total: -55.94 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.29 4.61 -58.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429181.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.448 kcal (2) G-P(sol) polarization free energy of solvation -63.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds