Wall clock time and date at job start Mon Mar 30 2020 01:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99652 * 2 1 4 4 H 1.48498 * 109.47152 * 270.00026 * 3 2 1 5 5 H 1.48501 * 109.47361 * 30.00077 * 3 2 1 6 6 H 1.48504 * 109.47018 * 149.99985 * 3 2 1 7 7 C 1.37871 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99898 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00145 * 179.97438 * 7 2 1 10 10 H 1.09004 * 115.51627 * 325.47954 * 9 7 2 11 11 C 1.55465 * 117.29169 * 111.66059 * 9 7 2 12 12 H 1.08998 * 120.33024 * 218.16240 * 11 9 7 13 13 C 1.54269 * 118.29832 * 14.18398 * 11 9 7 14 14 C 1.54886 * 104.19585 * 87.20032 * 13 11 9 15 15 C 1.54886 * 102.74773 * 322.05675 * 14 13 11 16 16 C 1.53002 * 117.46228 * 180.02562 * 9 7 2 17 17 H 1.09002 * 119.30064 * 141.09518 * 16 9 7 18 18 H 0.96995 * 119.99766 * 359.97438 * 1 2 3 19 19 H 1.08993 * 110.48909 * 328.51903 * 13 11 9 20 20 H 1.08999 * 110.59568 * 205.93115 * 13 11 9 21 21 H 1.09001 * 110.75484 * 203.74313 * 14 13 11 22 22 H 1.09005 * 110.75779 * 80.37070 * 14 13 11 23 23 H 1.09008 * 110.48769 * 279.26395 * 15 14 13 24 24 H 1.09006 * 110.48794 * 156.62365 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.9809 -0.3838 -0.5582 11 6 4.2249 -1.7030 1.2840 12 1 5.1348 -1.2179 1.6373 13 6 3.3904 -2.4745 2.3273 14 6 3.4516 -3.9465 1.8494 15 6 3.3783 -3.8090 0.3084 16 6 4.2172 -2.5515 0.0000 17 1 5.1193 -2.6839 -0.5973 18 1 -0.4849 0.8400 0.0004 19 1 2.3606 -2.1174 2.3317 20 1 3.8313 -2.3767 3.3193 21 1 2.5996 -4.5112 2.2279 22 1 4.3899 -4.4120 2.1515 23 1 2.3464 -3.6674 -0.0133 24 1 3.8124 -4.6848 -0.1739 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429183.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:21 Heat of formation + Delta-G solvation = -5.192961 kcal Electronic energy + Delta-G solvation = -8137.896941 eV Core-core repulsion = 6629.672608 eV Total energy + Delta-G solvation = -1508.224333 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.00169 -34.60443 -32.25687 -28.85584 -27.78683 -22.68918 -20.86027 -20.22702 -18.51165 -16.77872 -16.37002 -15.39107 -14.57708 -14.03604 -13.86169 -12.89640 -12.85471 -12.49647 -11.94998 -11.86193 -11.77344 -11.56016 -11.13363 -10.83262 -10.28799 -10.08686 -8.26345 -6.24569 1.36713 1.39287 1.52820 2.39312 2.85490 3.40884 3.90263 4.19349 4.29562 4.58736 4.61034 4.76920 4.84385 5.00043 5.03111 5.10634 5.29046 5.35623 5.36717 5.66171 5.71933 5.80713 6.42342 6.77766 7.35991 8.88783 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.075990 B = 0.021488 C = 0.019843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.382453 B = 1302.767175 C = 1410.715361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.478 4.478 8 H 0.044 0.956 9 C -0.031 4.031 10 H 0.072 0.928 11 C -0.197 4.197 12 H 0.102 0.898 13 C -0.091 4.091 14 C -0.110 4.110 15 C -0.095 4.095 16 C -0.169 4.169 17 H 0.110 0.890 18 H 0.266 0.734 19 H 0.041 0.959 20 H 0.070 0.930 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.043 0.957 24 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 -3.068 2.485 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.516 4.516 8 H 0.062 0.938 9 C -0.050 4.050 10 H 0.090 0.910 11 C -0.216 4.216 12 H 0.120 0.880 13 C -0.128 4.128 14 C -0.147 4.147 15 C -0.132 4.132 16 C -0.187 4.187 17 H 0.128 0.872 18 H 0.075 0.925 19 H 0.060 0.940 20 H 0.089 0.911 21 H 0.080 0.920 22 H 0.101 0.899 23 H 0.062 0.938 24 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.709 -2.976 2.491 9.534 hybrid contribution -0.203 0.832 -0.125 0.865 sum 8.505 -2.144 2.366 9.085 Atomic orbital electron populations 1.70047 1.08209 1.28071 1.52573 1.25914 0.95445 1.03198 0.94208 0.85681 0.79601 0.78508 0.78925 1.19357 1.21444 1.17223 1.20738 0.89739 0.93084 1.48004 0.93800 1.20688 0.93278 0.94365 0.96666 0.91019 1.23943 1.01824 1.05859 0.89928 0.87953 1.21770 0.99124 0.94812 0.97091 1.22562 1.01507 0.95904 0.94741 1.21890 0.99061 0.95882 0.96369 1.23296 1.01362 0.91917 1.02097 0.87248 0.92546 0.94039 0.91130 0.91991 0.89928 0.93828 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.50 13.96 21.45 0.30 -59.20 14 2 C 0.01 0.54 5.47 84.65 0.46 1.01 14 3 Si 0.95 44.83 27.19 68.60 1.86 46.69 14 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 14 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 14 6 H -0.25 -11.05 6.93 99.48 0.69 -10.36 14 7 C -0.48 -27.42 7.93 25.60 0.20 -27.21 14 8 H 0.04 2.77 6.11 -2.91 -0.02 2.75 14 9 C -0.03 -1.49 4.82 -10.69 -0.05 -1.54 14 10 H 0.07 3.31 6.49 -2.39 -0.02 3.30 14 11 C -0.20 -8.08 7.01 -9.21 -0.06 -8.15 14 12 H 0.10 3.75 8.14 -2.39 -0.02 3.73 14 13 C -0.09 -3.57 6.37 31.67 0.20 -3.37 14 14 C -0.11 -3.74 6.91 31.88 0.22 -3.52 14 15 C -0.09 -3.61 6.36 31.67 0.20 -3.40 14 16 C -0.17 -6.75 6.83 -10.05 -0.07 -6.82 14 17 H 0.11 3.79 8.14 -2.39 -0.02 3.77 14 18 H 0.27 15.59 8.31 -92.71 -0.77 14.82 14 19 H 0.04 1.95 7.07 -2.39 -0.02 1.94 14 20 H 0.07 2.37 8.14 -2.39 -0.02 2.35 14 21 H 0.06 2.01 8.14 -2.39 -0.02 1.99 14 22 H 0.08 2.33 8.14 -2.38 -0.02 2.32 14 23 H 0.04 1.97 5.98 -2.38 -0.01 1.95 14 24 H 0.08 2.40 8.14 -2.38 -0.02 2.38 14 Total: -1.00 -63.21 196.79 4.42 -58.79 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.15 Total: 6.73 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 1.10 Total: -53.01 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.30 Total: -59.20 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.86 Total: 46.69 kcal Total: -63.21 4.42 -58.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429183.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.598 kcal (2) G-P(sol) polarization free energy of solvation -63.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds