Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47423 * 89.99264 * 3 2 1 5 5 H 1.48497 * 109.47147 * 209.99788 * 3 2 1 6 6 H 1.48504 * 109.47088 * 329.99331 * 3 2 1 7 7 C 1.40070 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99837 * 15.85037 * 7 2 1 9 9 C 1.39951 * 120.00022 * 195.85206 * 7 2 1 10 10 C 1.39742 * 126.35317 * 20.07552 * 9 7 2 11 11 C 1.39304 * 107.05405 * 179.97438 * 10 9 7 12 12 C 1.35972 * 108.08749 * 0.02562 * 11 10 9 13 13 N 1.36171 * 109.05142 * 359.72735 * 12 11 10 14 14 N 1.36600 * 125.74276 * 180.30063 * 13 12 11 15 15 H 0.97005 * 120.00230 * 174.95152 * 1 2 3 16 16 H 1.08004 * 126.47432 * 359.96300 * 10 9 7 17 17 H 1.07994 * 125.95737 * 180.02562 * 11 10 9 18 18 H 1.07998 * 125.47277 * 179.97438 * 12 11 10 19 19 H 1.00900 * 111.00398 * 270.15943 * 14 13 12 20 20 H 1.00904 * 110.99972 * 34.11568 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0465 1.4000 5 1 3.5401 1.4401 -0.7000 6 1 1.4401 2.6526 -0.7002 7 6 2.0090 -1.2130 0.0005 8 1 1.4997 -2.1306 -0.2545 9 6 3.3686 -1.2359 0.3316 10 6 4.0645 -0.2550 1.0431 11 6 5.3861 -0.6836 1.1438 12 6 5.4896 -1.8843 0.5140 13 7 4.2695 -2.2342 0.0209 14 7 3.9857 -3.3793 -0.6676 15 1 -0.4851 -0.8368 -0.0739 16 1 3.6550 0.6623 1.4399 17 1 6.1886 -0.1545 1.6361 18 1 6.3934 -2.4685 0.4233 19 1 4.1150 -3.2464 -1.6594 20 1 4.5416 -4.1511 -0.3307 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260621019.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = 37.056179 kcal Electronic energy + Delta-G solvation = -7886.162266 eV Core-core repulsion = 6276.229650 eV Total energy + Delta-G solvation = -1609.932616 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.40119 -35.75701 -35.00707 -30.91076 -28.55939 -25.75633 -21.90927 -20.97505 -19.70304 -17.95456 -17.56367 -15.73271 -15.38361 -14.73356 -14.27756 -13.92777 -13.22017 -12.84677 -12.40338 -11.61832 -11.28539 -10.96109 -10.75274 -9.39297 -9.11801 -8.95640 -6.35108 1.32010 1.48374 1.79926 1.87459 2.11235 2.28186 2.34218 3.22402 3.99003 4.64120 4.81051 5.10254 5.43370 5.61437 5.66740 5.84975 5.96998 6.15598 6.59420 6.82277 6.93438 7.64257 8.12782 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.069422 B = 0.027089 C = 0.020640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.231926 B = 1033.371361 C = 1356.282047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.015 3.985 3 Si 1.121 2.879 4 H -0.266 1.266 5 H -0.262 1.262 6 H -0.288 1.288 7 C -0.537 4.537 8 H 0.046 0.954 9 C 0.215 3.785 10 C -0.381 4.381 11 C -0.162 4.162 12 C -0.139 4.139 13 N -0.336 5.336 14 N -0.604 5.604 15 H 0.273 0.727 16 H 0.119 0.881 17 H 0.145 0.855 18 H 0.175 0.825 19 H 0.353 0.647 20 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 -1.346 -1.163 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.197 4.197 3 Si 0.944 3.056 4 H -0.193 1.193 5 H -0.187 1.187 6 H -0.215 1.215 7 C -0.572 4.572 8 H 0.064 0.936 9 C 0.103 3.897 10 C -0.404 4.404 11 C -0.188 4.188 12 C -0.263 4.263 13 N -0.109 5.109 14 N -0.231 5.231 15 H 0.084 0.916 16 H 0.137 0.863 17 H 0.163 0.837 18 H 0.192 0.808 19 H 0.170 0.830 20 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.490 -0.019 -0.990 7.555 hybrid contribution 0.675 -2.288 -0.412 2.420 sum 8.165 -2.307 -1.401 8.600 Atomic orbital electron populations 1.70660 1.08154 1.31968 1.37578 1.28136 0.95735 1.06441 0.89423 0.82992 0.74076 0.69989 0.78512 1.19253 1.18720 1.21538 1.19526 0.93451 0.96180 1.48066 0.93601 1.18247 0.89454 0.86709 0.95286 1.20943 0.96664 1.04084 1.18671 1.20582 0.96447 0.96682 1.05057 1.22180 0.88626 1.01374 1.14080 1.42975 1.07366 1.14814 1.45756 1.59288 1.61144 0.95768 1.06893 0.91639 0.86308 0.83727 0.80794 0.83013 0.81428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.19 13.66 21.86 0.30 -49.89 14 2 C 0.01 0.85 5.50 85.28 0.47 1.32 14 3 Si 1.12 52.75 24.92 68.60 1.71 54.46 14 4 H -0.27 -11.81 6.59 99.48 0.66 -11.15 14 5 H -0.26 -12.20 6.67 99.48 0.66 -11.54 14 6 H -0.29 -12.83 7.11 99.48 0.71 -12.12 14 7 C -0.54 -31.76 9.62 23.13 0.22 -31.54 14 8 H 0.05 2.88 8.06 -2.91 -0.02 2.86 14 9 C 0.21 11.71 6.32 38.95 0.25 11.96 14 10 C -0.38 -19.45 8.19 22.89 0.19 -19.27 14 11 C -0.16 -7.05 10.80 22.00 0.24 -6.82 14 12 C -0.14 -5.67 11.55 83.49 0.96 -4.71 14 13 N -0.34 -15.56 3.76 -186.70 -0.70 -16.26 14 14 N -0.60 -22.84 10.26 37.02 0.38 -22.46 14 15 H 0.27 15.89 8.73 -92.70 -0.81 15.08 14 16 H 0.12 5.96 4.28 -2.91 -0.01 5.95 14 17 H 0.15 5.21 8.06 -2.91 -0.02 5.18 14 18 H 0.17 5.48 8.06 -2.91 -0.02 5.45 14 19 H 0.35 11.72 9.21 -210.56 -1.94 9.78 14 20 H 0.37 10.82 9.06 -210.55 -1.91 8.91 14 Total: -1.00 -66.10 180.39 1.30 -64.80 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -2.71 Total: 18.40 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 2.33 Total: -49.05 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -0.02 Total: -88.61 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 1.71 Total: 54.46 kcal Total: -66.10 1.30 -64.80 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260621019.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.853 kcal (2) G-P(sol) polarization free energy of solvation -66.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds