Wall clock time and date at job start Mon Mar 30 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86795 * 120.00131 * 2 1 4 4 H 1.48497 * 109.47033 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47183 * 119.99866 * 3 2 1 6 6 H 1.48498 * 109.47081 * 240.00074 * 3 2 1 7 7 C 1.40121 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00158 * 356.03899 * 7 2 1 9 9 C 1.40424 * 120.00182 * 176.04822 * 7 2 1 10 10 C 1.34842 * 118.65986 * 186.55882 * 9 7 2 11 11 C 1.50492 * 121.99455 * 180.33468 * 10 9 7 12 12 C 1.53223 * 109.48846 * 342.76474 * 11 10 9 13 13 C 1.53435 * 108.34243 * 47.28346 * 12 11 10 14 14 O 1.35418 * 118.65507 * 6.81977 * 9 7 2 15 15 H 0.97002 * 120.00110 * 174.81762 * 1 2 3 16 16 H 1.07997 * 119.00022 * 0.55698 * 10 9 7 17 17 H 1.09003 * 109.60961 * 222.66120 * 11 10 9 18 18 H 1.08999 * 109.29142 * 102.66850 * 11 10 9 19 19 H 1.08997 * 109.68719 * 287.57743 * 12 11 10 20 20 H 1.08994 * 109.71819 * 167.01975 * 12 11 10 21 21 H 1.09000 * 109.66998 * 176.65124 * 13 12 11 22 22 H 1.09001 * 109.70001 * 56.14437 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0081 -1.2135 -0.0005 8 1 1.4700 -2.1477 0.0636 9 6 3.4098 -1.2150 -0.0844 10 6 4.0484 -2.3951 -0.2178 11 6 5.5480 -2.4845 -0.3071 12 6 6.1226 -1.1069 -0.6534 13 6 5.4662 -0.0658 0.2628 14 8 4.0653 -0.0316 -0.0225 15 1 -0.4850 -0.8366 -0.0759 16 1 3.4659 -3.3032 -0.2656 17 1 5.8264 -3.1995 -1.0813 18 1 5.9469 -2.8138 0.6524 19 1 5.9045 -0.8693 -1.6946 20 1 7.2010 -1.1079 -0.4950 21 1 5.9030 0.9151 0.0754 22 1 5.6218 -0.3436 1.3053 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260962157.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:09 Heat of formation + Delta-G solvation = -52.035450 kcal Electronic energy + Delta-G solvation = -8416.582852 eV Core-core repulsion = 6743.182703 eV Total energy + Delta-G solvation = -1673.400149 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.85163 -33.62961 -32.75477 -30.45233 -25.89304 -23.76493 -21.53076 -18.29754 -17.82433 -15.82835 -14.64063 -14.12498 -13.59570 -13.27945 -12.28006 -12.11986 -11.87584 -11.69018 -10.68480 -10.17712 -9.90758 -9.77428 -9.46561 -9.16766 -8.98438 -7.15004 -7.03731 -4.41224 3.31744 3.36538 3.62512 3.96286 4.27042 4.95547 5.30535 5.59692 5.66897 5.79993 6.08740 6.34096 6.37784 6.65507 6.91317 7.14648 7.39577 7.72841 7.95499 8.14158 8.55582 8.78394 9.36510 10.24047 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.078925 B = 0.025685 C = 0.020000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.680553 B = 1089.859048 C = 1399.632554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.038 3.962 3 Si 1.111 2.889 4 H -0.303 1.303 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.084 0.916 9 C 0.238 3.762 10 C -0.494 4.494 11 C -0.034 4.034 12 C -0.152 4.152 13 C 0.066 3.934 14 O -0.336 6.336 15 H 0.280 0.720 16 H 0.087 0.913 17 H 0.039 0.961 18 H 0.029 0.971 19 H 0.066 0.934 20 H 0.060 0.940 21 H 0.084 0.916 22 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.029 2.012 -0.014 8.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.179 4.179 3 Si 0.943 3.057 4 H -0.232 1.232 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.102 0.898 9 C 0.193 3.807 10 C -0.516 4.516 11 C -0.071 4.071 12 C -0.190 4.190 13 C -0.009 4.009 14 O -0.253 6.253 15 H 0.091 0.909 16 H 0.105 0.895 17 H 0.058 0.942 18 H 0.047 0.953 19 H 0.084 0.916 20 H 0.078 0.922 21 H 0.102 0.898 22 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.650 3.779 0.032 8.532 hybrid contribution 0.264 -2.209 -0.040 2.225 sum 7.913 1.570 -0.008 8.068 Atomic orbital electron populations 1.70580 1.07942 1.32357 1.34780 1.27399 0.95799 1.05179 0.89492 0.82666 0.72659 0.71578 0.78798 1.23246 1.20952 1.20334 1.20321 0.89706 0.96195 1.49336 0.89755 1.17875 0.91086 0.82176 0.89578 1.21529 0.92946 0.96014 1.41137 1.19719 0.95502 0.94029 0.97867 1.22141 0.98800 0.97809 1.00263 1.22650 0.81001 0.99033 0.98256 1.85274 1.21413 1.31291 1.87280 0.90868 0.89488 0.94228 0.95266 0.91550 0.92172 0.89771 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.10 13.65 55.56 0.76 -23.34 14 2 C 0.04 1.10 5.52 -17.31 -0.10 1.00 14 3 Si 1.11 27.12 25.49 -169.99 -4.33 22.79 14 4 H -0.30 -7.16 7.11 56.52 0.40 -6.76 14 5 H -0.28 -6.64 6.98 56.52 0.39 -6.25 14 6 H -0.28 -6.57 6.93 56.52 0.39 -6.18 14 7 C -0.53 -15.52 9.43 -38.05 -0.36 -15.88 14 8 H 0.08 2.58 8.00 -52.49 -0.42 2.16 14 9 C 0.24 6.58 6.23 -39.96 -0.25 6.33 14 10 C -0.49 -12.93 9.72 -35.61 -0.35 -13.28 14 11 C -0.03 -0.73 6.22 -27.87 -0.17 -0.90 14 12 C -0.15 -2.86 6.21 -26.39 -0.16 -3.02 14 13 C 0.07 1.30 7.05 37.38 0.26 1.57 14 14 O -0.34 -8.44 4.56 -17.95 -0.08 -8.52 14 15 H 0.28 7.90 8.73 -40.82 -0.36 7.54 14 16 H 0.09 2.36 7.97 -52.49 -0.42 1.94 14 17 H 0.04 0.78 8.14 -51.93 -0.42 0.36 14 18 H 0.03 0.59 8.14 -51.93 -0.42 0.17 14 19 H 0.07 1.27 8.14 -51.93 -0.42 0.85 14 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 14 21 H 0.08 1.39 8.14 -51.93 -0.42 0.96 14 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 14 LS Contribution 188.64 15.07 2.84 2.84 Total: -1.00 -30.08 188.64 -4.48 -34.56 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -2.54 Total: -4.14 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -1.12 Total: -24.19 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.76 Total: -23.34 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.08 Total: -8.52 kcal Atomic # 14 Polarization: 27.12 SS G_CDS: -4.33 Total: 22.79 kcal Total LS contribution 2.84 Total: 2.84 kcal Total: -30.08 -4.48 -34.56 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962157.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.480 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds