Wall clock time and date at job start Mon Mar 30 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86795 * 120.00131 * 2 1 4 4 H 1.48497 * 109.47033 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47183 * 119.99866 * 3 2 1 6 6 H 1.48498 * 109.47081 * 240.00074 * 3 2 1 7 7 C 1.40121 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00158 * 356.03899 * 7 2 1 9 9 C 1.40424 * 120.00182 * 176.04822 * 7 2 1 10 10 C 1.34842 * 118.65986 * 186.55882 * 9 7 2 11 11 C 1.50492 * 121.99455 * 180.33468 * 10 9 7 12 12 C 1.53223 * 109.48846 * 342.76474 * 11 10 9 13 13 C 1.53435 * 108.34243 * 47.28346 * 12 11 10 14 14 O 1.35418 * 118.65507 * 6.81977 * 9 7 2 15 15 H 0.97002 * 120.00110 * 174.81762 * 1 2 3 16 16 H 1.07997 * 119.00022 * 0.55698 * 10 9 7 17 17 H 1.09003 * 109.60961 * 222.66120 * 11 10 9 18 18 H 1.08999 * 109.29142 * 102.66850 * 11 10 9 19 19 H 1.08997 * 109.68719 * 287.57743 * 12 11 10 20 20 H 1.08994 * 109.71819 * 167.01975 * 12 11 10 21 21 H 1.09000 * 109.66998 * 176.65124 * 13 12 11 22 22 H 1.09001 * 109.70001 * 56.14437 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0081 -1.2135 -0.0005 8 1 1.4700 -2.1477 0.0636 9 6 3.4098 -1.2150 -0.0844 10 6 4.0484 -2.3951 -0.2178 11 6 5.5480 -2.4845 -0.3071 12 6 6.1226 -1.1069 -0.6534 13 6 5.4662 -0.0658 0.2628 14 8 4.0653 -0.0316 -0.0225 15 1 -0.4850 -0.8366 -0.0759 16 1 3.4659 -3.3032 -0.2656 17 1 5.8264 -3.1995 -1.0813 18 1 5.9469 -2.8138 0.6524 19 1 5.9045 -0.8693 -1.6946 20 1 7.2010 -1.1079 -0.4950 21 1 5.9030 0.9151 0.0754 22 1 5.6218 -0.3436 1.3053 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962157.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:09 Heat of formation + Delta-G solvation = -72.022858 kcal Electronic energy + Delta-G solvation = -8417.449571 eV Core-core repulsion = 6743.182703 eV Total energy + Delta-G solvation = -1674.266868 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.69880 -35.70965 -34.51642 -32.42199 -27.78989 -25.59102 -23.35039 -20.45318 -19.59964 -17.65481 -16.54449 -15.93907 -15.51811 -14.94670 -14.31643 -13.92977 -13.66252 -13.48440 -12.53672 -11.96100 -11.60088 -11.55576 -11.44205 -11.22783 -10.80326 -9.31773 -9.15063 -6.64722 1.33428 1.44577 1.72975 1.97791 2.32475 3.05799 3.26926 4.06867 4.14458 4.34044 4.63251 4.80631 4.90096 5.03754 5.24677 5.35554 5.38093 5.46113 5.87518 5.94208 6.41909 6.63744 7.31656 8.01645 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.078925 B = 0.025685 C = 0.020000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.680553 B = 1089.859048 C = 1399.632554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.003 3.997 3 Si 1.150 2.850 4 H -0.294 1.294 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.563 4.563 8 H 0.049 0.951 9 C 0.226 3.774 10 C -0.492 4.492 11 C -0.040 4.040 12 C -0.146 4.146 13 C 0.046 3.954 14 O -0.347 6.347 15 H 0.272 0.728 16 H 0.061 0.939 17 H 0.054 0.946 18 H 0.046 0.954 19 H 0.061 0.939 20 H 0.108 0.892 21 H 0.127 0.873 22 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 3.210 -0.027 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.208 4.208 3 Si 0.975 3.025 4 H -0.224 1.224 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.068 0.932 9 C 0.181 3.819 10 C -0.514 4.514 11 C -0.077 4.077 12 C -0.183 4.183 13 C -0.027 4.027 14 O -0.264 6.264 15 H 0.083 0.917 16 H 0.079 0.921 17 H 0.073 0.927 18 H 0.064 0.936 19 H 0.080 0.920 20 H 0.127 0.873 21 H 0.145 0.855 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.343 4.949 0.022 11.466 hybrid contribution -0.492 -2.732 -0.030 2.776 sum 9.851 2.217 -0.007 10.098 Atomic orbital electron populations 1.70643 1.08494 1.31878 1.36713 1.28687 0.95956 1.07843 0.88333 0.82246 0.72130 0.68357 0.79795 1.22363 1.19322 1.19168 1.20369 0.91518 0.95485 1.51996 0.93230 1.17716 0.90583 0.83672 0.89935 1.21941 0.96169 0.94653 1.38596 1.19828 0.91765 0.96697 0.99399 1.22139 1.01419 0.95174 0.99604 1.23220 0.78273 1.02015 0.99226 1.85221 1.24352 1.29655 1.87184 0.91749 0.92067 0.92716 0.93587 0.92025 0.87345 0.85535 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.58 13.65 21.86 0.30 -50.28 14 2 C 0.00 0.19 5.52 85.31 0.47 0.66 14 3 Si 1.15 53.52 25.49 68.60 1.75 55.27 14 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 14 5 H -0.27 -11.63 6.98 99.48 0.69 -10.94 14 6 H -0.27 -11.76 6.93 99.48 0.69 -11.07 14 7 C -0.56 -34.31 9.43 23.26 0.22 -34.10 14 8 H 0.05 3.23 8.00 -2.91 -0.02 3.21 14 9 C 0.23 12.45 6.23 22.02 0.14 12.58 14 10 C -0.49 -25.45 9.72 24.84 0.24 -25.21 14 11 C -0.04 -1.56 6.22 29.86 0.19 -1.38 14 12 C -0.15 -4.75 6.21 30.81 0.19 -4.56 14 13 C 0.05 1.62 7.05 72.13 0.51 2.13 14 14 O -0.35 -16.54 4.56 -87.13 -0.40 -16.93 14 15 H 0.27 16.06 8.73 -92.71 -0.81 15.25 14 16 H 0.06 3.40 7.97 -2.91 -0.02 3.38 14 17 H 0.05 1.98 8.14 -2.39 -0.02 1.97 14 18 H 0.05 1.67 8.14 -2.39 -0.02 1.66 14 19 H 0.06 2.08 8.14 -2.39 -0.02 2.06 14 20 H 0.11 2.55 8.14 -2.39 -0.02 2.53 14 21 H 0.13 3.40 8.14 -2.39 -0.02 3.38 14 22 H 0.06 2.07 8.14 -2.39 -0.02 2.05 14 Total: -1.00 -65.48 188.64 4.72 -60.76 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: 1.12 Total: 1.05 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 1.95 Total: -49.87 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.30 Total: -50.28 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.40 Total: -16.93 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 1.75 Total: 55.27 kcal Total: -65.48 4.72 -60.76 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962157.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.261 kcal (2) G-P(sol) polarization free energy of solvation -65.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds