Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.31553 * 123.19400 * 94.73127 * 10 9 7 12 12 C 1.51939 * 107.36566 * 179.37801 * 11 10 9 13 13 C 1.54855 * 101.72212 * 345.20271 * 12 11 10 14 14 O 1.35237 * 123.19851 * 275.01677 * 10 9 7 15 15 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 16 16 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 17 17 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 18 18 H 1.07997 * 126.32069 * 359.51762 * 11 10 9 19 19 H 1.08999 * 111.14160 * 227.01077 * 12 11 10 20 20 H 1.08994 * 110.81053 * 103.25056 * 12 11 10 21 21 H 1.09004 * 110.96819 * 265.51587 * 13 12 11 22 22 H 1.09004 * 111.00148 * 141.77201 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6343 -4.2539 1.0804 12 6 3.5964 -5.3517 0.6589 13 6 3.3184 -5.4470 -0.8615 14 8 2.7817 -4.1400 -1.1444 15 1 -0.4850 -0.8400 0.0004 16 1 0.6281 -2.5591 0.8866 17 1 0.6207 -2.5548 -0.8933 18 1 2.3354 -4.0188 2.0912 19 1 3.3630 -6.2921 1.1581 20 1 4.6282 -5.0565 0.8493 21 1 2.5853 -6.2246 -1.0761 22 1 4.2403 -5.6189 -1.4172 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260997357.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = -31.969475 kcal Electronic energy + Delta-G solvation = -8057.415424 eV Core-core repulsion = 6384.885402 eV Total energy + Delta-G solvation = -1672.530023 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.92394 -33.70949 -31.64738 -30.30952 -26.27239 -23.12056 -21.65252 -19.29054 -16.92241 -15.74563 -15.62350 -13.89978 -13.63247 -12.90389 -12.55280 -11.86629 -11.61032 -11.33672 -10.98496 -10.81909 -10.62147 -10.18141 -9.99843 -8.80659 -8.38446 -7.42314 -6.39900 -4.10751 3.06541 3.44725 3.48870 3.65090 4.18028 4.54999 5.10197 5.33407 5.36605 5.44926 5.81567 6.05260 6.17413 6.50599 6.65511 6.99618 7.06137 7.41384 8.05808 8.15563 8.42084 8.81255 9.59172 10.99382 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.100331 B = 0.014535 C = 0.014020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 279.008920 B = 1925.936518 C = 1996.672836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.077 2.923 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.593 4.593 8 H 0.053 0.947 9 C 0.052 3.948 10 C 0.120 3.880 11 C -0.335 4.335 12 C -0.111 4.111 13 C 0.040 3.960 14 O -0.315 6.315 15 H 0.269 0.731 16 H 0.037 0.963 17 H 0.026 0.974 18 H 0.137 0.863 19 H 0.069 0.931 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.151 -7.367 0.393 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.904 3.096 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.631 4.631 8 H 0.072 0.928 9 C 0.015 3.985 10 C 0.075 3.925 11 C -0.355 4.355 12 C -0.149 4.149 13 C -0.035 4.035 14 O -0.229 6.229 15 H 0.079 0.921 16 H 0.055 0.945 17 H 0.044 0.956 18 H 0.155 0.845 19 H 0.088 0.912 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.977 -5.634 0.150 7.519 hybrid contribution 0.327 -1.931 0.230 1.972 sum 5.304 -7.565 0.380 9.247 Atomic orbital electron populations 1.70768 1.06832 1.30592 1.46528 1.25928 0.96489 1.02742 0.93530 0.83432 0.74661 0.74643 0.76817 1.21331 1.21369 1.20863 1.21882 0.94580 0.90623 1.56032 0.92830 1.18325 0.92295 0.90001 0.97839 1.22188 0.92168 0.93535 0.84566 1.23267 1.07857 1.05566 0.98773 1.21917 0.99660 0.98618 0.94661 1.23835 0.98532 0.85120 0.96047 1.86853 1.71678 1.30407 1.33915 0.92090 0.94509 0.95568 0.84507 0.91214 0.91331 0.91523 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.10 13.65 55.43 0.76 -27.35 14 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 14 3 Si 1.08 25.83 29.90 -169.99 -5.08 20.74 14 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 14 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 14 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 14 7 C -0.59 -17.63 9.09 -34.44 -0.31 -17.94 14 8 H 0.05 1.61 7.74 -52.49 -0.41 1.20 14 9 C 0.05 1.42 4.74 -29.03 -0.14 1.28 14 10 C 0.12 2.89 6.08 -36.16 -0.22 2.67 14 11 C -0.34 -7.03 10.87 -35.55 -0.39 -7.42 14 12 C -0.11 -1.85 7.15 -26.29 -0.19 -2.04 14 13 C 0.04 0.66 8.12 38.14 0.31 0.97 14 14 O -0.31 -7.15 11.12 -17.40 -0.19 -7.35 14 15 H 0.27 8.20 7.22 -40.82 -0.29 7.91 14 16 H 0.04 1.00 7.97 -51.93 -0.41 0.58 14 17 H 0.03 0.73 8.00 -51.93 -0.42 0.32 14 18 H 0.14 2.77 8.06 -52.49 -0.42 2.34 14 19 H 0.07 0.97 8.14 -51.93 -0.42 0.55 14 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 14 21 H 0.07 0.97 8.14 -51.93 -0.42 0.55 14 22 H 0.09 1.24 8.14 -51.93 -0.42 0.82 14 LS Contribution 199.08 15.07 3.00 3.00 Total: -1.00 -31.79 199.08 -4.99 -36.78 By element: Atomic # 1 Polarization: -1.32 SS G_CDS: -2.44 Total: -3.76 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.03 Total: -22.08 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: 0.76 Total: -27.35 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.19 Total: -7.35 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -31.79 -4.99 -36.78 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997357.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.814 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds