Wall clock time and date at job start Mon Mar 30 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47072 * 2 1 4 4 C 1.53001 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55911 * 330.69022 * 4 3 2 6 6 C 1.52997 * 117.49889 * 116.37594 * 4 3 2 7 7 C 1.53000 * 117.50223 * 185.00332 * 4 3 2 8 8 H 1.09004 * 117.49237 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.50175 * 145.02232 * 7 4 3 10 10 H 1.08002 * 119.99767 * 0.02562 * 9 7 4 11 11 C 1.37868 * 120.00029 * 180.02562 * 9 7 4 12 12 N 1.31512 * 120.00197 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 120.00071 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46952 * 90.00180 * 13 11 9 15 15 H 1.48500 * 109.47146 * 209.99675 * 13 11 9 16 16 H 1.48493 * 109.47069 * 330.00300 * 13 11 9 17 17 H 1.09008 * 109.46709 * 59.99866 * 1 2 3 18 18 H 1.08994 * 109.46686 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47403 * 299.99974 * 1 2 3 20 20 H 1.09002 * 109.47403 * 240.00025 * 2 1 3 21 21 H 1.09003 * 109.47102 * 119.99888 * 2 1 3 22 22 H 1.08999 * 109.46947 * 60.00302 * 3 2 1 23 23 H 1.08991 * 109.47447 * 299.99847 * 3 2 1 24 24 H 1.08999 * 117.49685 * 0.02562 * 6 4 3 25 25 H 1.08999 * 117.52022 * 214.97106 * 6 4 3 26 26 H 0.97004 * 120.00089 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0401 0.5852 0.4824 6 6 4.2770 2.0453 -1.2150 7 6 4.2765 2.7945 0.1191 8 1 3.6511 3.6840 0.1961 9 6 5.5689 2.8389 0.8927 10 1 5.9630 1.9373 1.3379 11 6 6.2483 4.0305 1.0321 12 7 5.7687 5.1283 0.4896 13 14 7.8501 4.0856 1.9917 14 1 8.9875 3.8313 1.0713 15 1 8.0078 5.4242 2.6152 16 1 7.8285 3.0454 3.0511 17 1 -0.3633 0.5139 -0.8901 18 1 -0.3632 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 1.6767 1.9563 0.8900 23 1 1.6768 1.9564 -0.8899 24 1 3.6520 2.4422 -2.0150 25 1 5.2123 1.5849 -1.5332 26 1 6.2465 5.9667 0.5881 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261000097.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:05 Heat of formation + Delta-G solvation = -23.248890 kcal Electronic energy + Delta-G solvation = -8032.171239 eV Core-core repulsion = 6495.852464 eV Total energy + Delta-G solvation = -1536.318775 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.59725 -35.14916 -33.90177 -28.58435 -27.05965 -22.74814 -22.07379 -21.03909 -18.56175 -16.59410 -16.05561 -15.51548 -14.91245 -14.06665 -13.70681 -13.17245 -12.99285 -12.92837 -12.72106 -12.26066 -12.01814 -11.75971 -11.55591 -11.32507 -11.07583 -10.34766 -10.07979 -8.21589 -6.27796 1.40030 1.41061 1.52800 2.39206 2.98121 3.55074 3.98062 4.25754 4.31292 4.51745 4.74765 4.77057 4.82089 4.98940 5.01483 5.07643 5.20820 5.24725 5.44622 5.50295 5.52289 5.66717 5.78672 6.33728 6.79200 7.35049 8.90244 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.112728 B = 0.011466 C = 0.011188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 248.326297 B = 2441.321336 C = 2502.172189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.079 4.079 4 C -0.162 4.162 5 H 0.084 0.916 6 C -0.203 4.203 7 C -0.009 4.009 8 H 0.046 0.954 9 C -0.518 4.518 10 H 0.056 0.944 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.968 3.032 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.264 1.264 17 H 0.054 0.946 18 H 0.067 0.933 19 H 0.053 0.947 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -7.143 -0.157 9.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.116 4.116 4 C -0.180 4.180 5 H 0.102 0.898 6 C -0.241 4.241 7 C -0.027 4.027 8 H 0.064 0.936 9 C -0.556 4.556 10 H 0.074 0.926 11 C -0.189 4.189 12 N -0.565 5.565 13 Si 0.792 3.208 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.188 1.188 17 H 0.074 0.926 18 H 0.086 0.914 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.639 -6.952 -0.174 8.953 hybrid contribution 0.909 0.403 0.244 1.024 sum -4.730 -6.549 0.070 8.079 Atomic orbital electron populations 1.21760 0.94613 1.02246 1.01885 1.21474 0.96585 0.95384 1.01891 1.21117 0.91807 0.97843 1.00853 1.22426 0.94712 0.98235 1.02663 0.89765 1.23059 1.00831 1.07807 0.92420 1.19859 0.96381 0.90766 0.95697 0.93601 1.21064 1.06541 0.94754 1.33200 0.92586 1.25936 1.01560 0.95017 0.96346 1.70094 1.40756 0.99965 1.45691 0.85417 0.78879 0.77760 0.78790 1.19745 1.20385 1.18821 0.92640 0.91399 0.92759 0.91986 0.92199 0.92918 0.92636 0.90542 0.91318 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.91 71.98 0.71 -2.60 15 2 C -0.12 -3.23 5.89 30.60 0.18 -3.05 15 3 C -0.08 -2.80 5.50 30.60 0.17 -2.63 15 4 C -0.16 -7.10 5.44 -10.79 -0.06 -7.15 15 5 H 0.08 3.66 8.07 -2.39 -0.02 3.64 15 6 C -0.20 -9.59 9.88 30.60 0.30 -9.29 15 7 C -0.01 -0.46 5.30 -11.54 -0.06 -0.53 15 8 H 0.05 2.72 7.90 -2.38 -0.02 2.70 15 9 C -0.52 -30.29 9.20 25.60 0.24 -30.05 15 10 H 0.06 3.19 7.81 -2.91 -0.02 3.16 15 11 C 0.01 0.59 5.46 84.65 0.46 1.06 15 12 N -0.93 -56.46 13.13 21.44 0.28 -56.18 15 13 Si 0.97 44.49 29.54 68.60 2.03 46.51 15 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 17 H 0.05 1.19 8.14 -2.38 -0.02 1.18 15 18 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 19 H 0.05 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.05 1.93 7.88 -2.39 -0.02 1.91 15 24 H 0.08 3.34 8.03 -2.39 -0.02 3.33 15 25 H 0.07 3.25 8.14 -2.39 -0.02 3.23 15 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 Total: -1.00 -62.27 225.57 5.37 -56.90 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.12 Total: 7.01 kcal Atomic # 6 Polarization: -56.19 SS G_CDS: 1.94 Total: -54.25 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.27 5.37 -56.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000097.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.653 kcal (2) G-P(sol) polarization free energy of solvation -62.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds