Wall clock time and date at job start Mon Mar 30 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 C 1.52998 * 115.54639 * 34.33441 * 3 2 1 5 5 C 1.52999 * 117.49971 * 248.62048 * 3 2 1 6 6 C 1.52997 * 117.49799 * 179.97438 * 3 2 1 7 7 H 1.09007 * 117.50166 * 215.00449 * 6 3 2 8 8 C 1.50706 * 117.50188 * 0.02562 * 6 3 2 9 9 H 1.08005 * 119.99758 * 359.97438 * 8 6 3 10 10 C 1.37871 * 120.00102 * 179.97438 * 8 6 3 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 H 1.08995 * 109.46954 * 59.99422 * 1 2 3 17 17 H 1.09001 * 109.46713 * 179.97438 * 1 2 3 18 18 H 1.08997 * 109.46669 * 299.99719 * 1 2 3 19 19 H 1.09003 * 109.47335 * 240.00163 * 2 1 3 20 20 H 1.09003 * 109.47266 * 120.00026 * 2 1 3 21 21 H 1.09004 * 109.46623 * 205.66789 * 4 3 2 22 22 H 1.08996 * 109.47006 * 325.66441 * 4 3 2 23 23 H 1.09002 * 109.47667 * 85.67079 * 4 3 2 24 24 H 1.08995 * 117.49422 * 145.02175 * 5 3 2 25 25 H 1.09001 * 117.49849 * 0.02562 * 5 3 2 26 26 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4445 0.7786 5 6 2.7420 1.9436 -1.2637 6 6 3.5550 1.6561 0.0006 7 1 3.9426 2.5107 0.5553 8 6 4.4308 0.4296 0.0006 9 1 3.9833 -0.5534 0.0005 10 6 5.8031 0.5624 0.0006 11 7 6.3480 1.7594 0.0011 12 14 6.8885 -0.9579 0.0012 13 1 8.3156 -0.5472 0.0005 14 1 6.6064 -1.7670 1.2140 15 1 6.6065 -1.7680 -1.2110 16 1 -0.3633 0.5139 -0.8899 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3632 0.5138 0.8900 19 1 1.8934 -0.5138 -0.8900 20 1 1.8934 -0.5138 0.8900 21 1 1.3352 3.4441 0.3705 22 1 0.1340 2.1704 0.6912 23 1 1.4778 2.4331 1.8286 24 1 2.5947 2.9875 -1.5408 25 1 2.8400 1.2458 -2.0953 26 1 5.7843 2.5488 0.0011 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261004698.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:38 Heat of formation + Delta-G solvation = -19.081598 kcal Electronic energy + Delta-G solvation = -8383.778747 eV Core-core repulsion = 6847.640679 eV Total energy + Delta-G solvation = -1536.138068 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.38612 -34.83009 -32.59873 -29.18518 -26.73464 -24.57370 -22.72940 -19.85753 -18.26667 -16.13635 -15.85575 -15.52859 -15.21645 -13.96590 -13.89772 -13.49976 -12.90846 -12.63627 -12.59224 -12.48657 -11.98088 -11.92659 -11.65455 -11.13334 -10.70087 -10.26696 -10.02309 -8.65947 -6.29246 1.52078 1.60078 1.79666 2.56414 2.96904 3.42796 3.99803 4.15399 4.31288 4.47063 4.59341 4.74528 4.77134 4.92445 4.99433 5.03424 5.10304 5.23413 5.34658 5.38815 5.43915 5.72347 6.14279 6.17831 6.61020 7.47238 8.74559 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.074069 B = 0.017018 C = 0.014896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.935798 B = 1644.934926 C = 1879.261510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.133 4.133 4 C -0.110 4.110 5 C -0.202 4.202 6 C -0.030 4.030 7 H 0.035 0.965 8 C -0.577 4.577 9 H 0.055 0.945 10 C -0.035 4.035 11 N -0.938 5.938 12 Si 1.117 2.883 13 H -0.283 1.283 14 H -0.268 1.268 15 H -0.271 1.271 16 H 0.056 0.944 17 H 0.063 0.937 18 H 0.067 0.933 19 H 0.041 0.959 20 H 0.047 0.953 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 -2.979 0.379 9.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.133 4.133 4 C -0.166 4.166 5 C -0.240 4.240 6 C -0.049 4.049 7 H 0.053 0.947 8 C -0.615 4.615 9 H 0.073 0.927 10 C -0.233 4.233 11 N -0.575 5.575 12 Si 0.938 3.062 13 H -0.209 1.209 14 H -0.193 1.193 15 H -0.196 1.196 16 H 0.075 0.925 17 H 0.082 0.918 18 H 0.086 0.914 19 H 0.060 0.940 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.104 0.896 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.364 -3.476 0.383 8.152 hybrid contribution -1.262 0.933 -0.163 1.578 sum -8.627 -2.542 0.221 8.996 Atomic orbital electron populations 1.21802 0.93767 1.01963 1.02175 1.20834 0.96457 0.93362 1.00296 1.21661 0.94767 0.96688 1.00176 1.21407 0.99920 0.96705 0.98596 1.23230 1.09255 0.99092 0.92451 1.20040 0.90728 0.97075 0.97048 0.94657 1.21868 0.93288 0.92599 1.53723 0.92706 1.27401 0.98578 1.04652 0.92644 1.70906 1.39151 0.98737 1.48673 0.82944 0.74156 0.71142 0.77971 1.20892 1.19349 1.19581 0.92526 0.91815 0.91434 0.93983 0.93462 0.93291 0.89560 0.93250 0.90660 0.91474 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.92 71.98 0.64 -3.29 15 2 C -0.07 -2.76 4.70 30.60 0.14 -2.62 15 3 C -0.13 -5.63 2.46 -52.18 -0.13 -5.76 15 4 C -0.11 -3.76 9.49 71.98 0.68 -3.08 15 5 C -0.20 -9.43 9.53 30.61 0.29 -9.14 15 6 C -0.03 -1.62 4.98 -11.52 -0.06 -1.67 15 7 H 0.04 2.03 7.07 -2.38 -0.02 2.02 15 8 C -0.58 -33.43 8.75 25.60 0.22 -33.21 15 9 H 0.05 3.09 6.60 -2.91 -0.02 3.08 15 10 C -0.04 -2.07 5.46 84.65 0.46 -1.60 15 11 N -0.94 -59.04 13.65 21.45 0.29 -58.75 15 12 Si 1.12 50.95 29.90 68.60 2.05 53.00 15 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 15 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 16 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 17 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 18 H 0.07 1.71 6.45 -2.39 -0.02 1.69 15 19 H 0.04 1.72 7.76 -2.39 -0.02 1.70 15 20 H 0.05 1.91 8.00 -2.39 -0.02 1.89 15 21 H 0.05 1.63 7.90 -2.38 -0.02 1.61 15 22 H 0.09 2.41 5.58 -2.39 -0.01 2.40 15 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.07 3.24 8.05 -2.39 -0.02 3.22 15 25 H 0.07 3.20 8.05 -2.39 -0.02 3.18 15 26 H 0.26 16.35 6.80 -92.71 -0.63 15.72 15 Total: -1.00 -64.42 215.83 5.88 -58.54 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.27 Total: 7.58 kcal Atomic # 6 Polarization: -62.63 SS G_CDS: 2.26 Total: -60.37 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.29 Total: -58.75 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.00 kcal Total: -64.42 5.88 -58.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004698.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.459 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds