Wall clock time and date at job start Mon Mar 30 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47191 * 2 1 4 4 C 1.52993 * 115.56053 * 325.68957 * 3 2 1 5 5 C 1.53006 * 117.49719 * 111.38028 * 3 2 1 6 6 C 1.52997 * 59.99833 * 107.48876 * 5 3 2 7 7 H 1.08996 * 117.49848 * 107.51568 * 6 5 3 8 8 C 1.50706 * 117.49907 * 252.50530 * 6 5 3 9 9 H 1.08005 * 119.99758 * 68.61363 * 8 6 5 10 10 C 1.37871 * 120.00102 * 248.61247 * 8 6 5 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 300.00068 * 12 10 8 15 15 H 1.48504 * 109.47102 * 60.00417 * 12 10 8 16 16 H 1.08997 * 109.46607 * 299.99760 * 1 2 3 17 17 H 1.09003 * 109.46863 * 59.99752 * 1 2 3 18 18 H 1.09001 * 109.46725 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.47272 * 240.00123 * 2 1 3 20 20 H 1.08995 * 109.47468 * 120.00255 * 2 1 3 21 21 H 1.09001 * 109.47498 * 274.30628 * 4 3 2 22 22 H 1.08999 * 109.47449 * 34.31467 * 4 3 2 23 23 H 1.09007 * 109.46957 * 154.30697 * 4 3 2 24 24 H 1.09001 * 117.49542 * 0.02562 * 5 3 2 25 25 H 1.08997 * 117.49583 * 214.98393 * 5 3 2 26 26 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4449 -0.7780 5 6 2.7420 1.9436 1.2638 6 6 3.5550 1.6561 0.0000 7 1 3.9431 2.5108 -0.5540 8 6 4.4308 0.4296 0.0000 9 1 3.9833 -0.5534 0.0002 10 6 5.8031 0.5624 -0.0003 11 7 6.3480 1.7594 -0.0001 12 14 6.8885 -0.9579 0.0004 13 1 8.3156 -0.5472 -0.0007 14 1 6.6066 -1.7669 1.2133 15 1 6.6063 -1.7681 -1.2117 16 1 -0.3632 0.5138 0.8900 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 1.8934 -0.5138 -0.8900 20 1 1.8934 -0.5138 0.8899 21 1 1.4777 2.4340 -1.8280 22 1 0.1339 2.1707 -0.6907 23 1 1.3352 3.4443 -0.3695 24 1 2.8408 1.2454 2.0950 25 1 2.5947 2.9874 1.5410 26 1 5.7843 2.5488 0.0000 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261004699.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:40 Heat of formation + Delta-G solvation = -19.091587 kcal Electronic energy + Delta-G solvation = -8383.845136 eV Core-core repulsion = 6847.706635 eV Total energy + Delta-G solvation = -1536.138501 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.38846 -34.83031 -32.59983 -29.18603 -26.73430 -24.57414 -22.72784 -19.85798 -18.26710 -16.13769 -15.85577 -15.52832 -15.21690 -13.96526 -13.89787 -13.50013 -12.90863 -12.63622 -12.59245 -12.48591 -11.98080 -11.92692 -11.65486 -11.13385 -10.70096 -10.26772 -10.02270 -8.65964 -6.29263 1.52071 1.60074 1.79658 2.56405 2.96903 3.42778 3.99837 4.15379 4.31285 4.47096 4.59505 4.74516 4.77119 4.92409 4.99414 5.03417 5.10335 5.23411 5.34713 5.38805 5.43905 5.72370 6.14264 6.17825 6.61008 7.47226 8.74545 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.074074 B = 0.017018 C = 0.014896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.910434 B = 1644.916103 C = 1879.304695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.133 4.133 4 C -0.109 4.109 5 C -0.202 4.202 6 C -0.030 4.030 7 H 0.035 0.965 8 C -0.577 4.577 9 H 0.055 0.945 10 C -0.035 4.035 11 N -0.938 5.938 12 Si 1.117 2.883 13 H -0.283 1.283 14 H -0.270 1.270 15 H -0.268 1.268 16 H 0.056 0.944 17 H 0.067 0.933 18 H 0.063 0.937 19 H 0.047 0.953 20 H 0.041 0.959 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.928 -2.979 -0.375 9.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.133 4.133 4 C -0.166 4.166 5 C -0.240 4.240 6 C -0.049 4.049 7 H 0.053 0.947 8 C -0.615 4.615 9 H 0.073 0.927 10 C -0.233 4.233 11 N -0.575 5.575 12 Si 0.938 3.062 13 H -0.209 1.209 14 H -0.196 1.196 15 H -0.194 1.194 16 H 0.075 0.925 17 H 0.086 0.914 18 H 0.082 0.918 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.104 0.896 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.365 -3.475 -0.379 8.153 hybrid contribution -1.262 0.933 0.161 1.578 sum -8.627 -2.542 -0.218 8.996 Atomic orbital electron populations 1.21803 0.93767 1.01964 1.02175 1.20832 0.96458 0.93360 1.00296 1.21661 0.94767 0.96687 1.00180 1.21406 0.99919 0.96701 0.98599 1.23225 1.09250 0.99094 0.92457 1.20031 0.90722 0.97075 0.97064 0.94663 1.21868 0.93288 0.92600 1.53724 0.92705 1.27401 0.98578 1.04652 0.92644 1.70906 1.39151 0.98736 1.48674 0.82944 0.74156 0.71141 0.77971 1.20891 1.19570 1.19359 0.92519 0.91439 0.91815 0.93464 0.93982 0.93251 0.89559 0.93290 0.91478 0.90654 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.92 71.98 0.64 -3.29 15 2 C -0.07 -2.76 4.70 30.60 0.14 -2.62 15 3 C -0.13 -5.63 2.47 -52.18 -0.13 -5.76 15 4 C -0.11 -3.76 9.49 71.98 0.68 -3.08 15 5 C -0.20 -9.43 9.53 30.60 0.29 -9.14 15 6 C -0.03 -1.62 4.98 -11.54 -0.06 -1.67 15 7 H 0.04 2.03 7.06 -2.39 -0.02 2.01 15 8 C -0.58 -33.43 8.75 25.60 0.22 -33.21 15 9 H 0.05 3.09 6.60 -2.91 -0.02 3.08 15 10 C -0.04 -2.07 5.46 84.65 0.46 -1.60 15 11 N -0.94 -59.04 13.65 21.45 0.29 -58.75 15 12 Si 1.12 50.95 29.90 68.60 2.05 53.01 15 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 14 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 16 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 17 H 0.07 1.71 6.45 -2.39 -0.02 1.69 15 18 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 19 H 0.05 1.91 8.00 -2.39 -0.02 1.89 15 20 H 0.04 1.72 7.75 -2.39 -0.02 1.70 15 21 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.09 2.41 5.59 -2.39 -0.01 2.40 15 23 H 0.05 1.63 7.90 -2.38 -0.02 1.61 15 24 H 0.07 3.20 8.05 -2.39 -0.02 3.18 15 25 H 0.08 3.24 8.05 -2.39 -0.02 3.22 15 26 H 0.26 16.35 6.79 -92.71 -0.63 15.72 15 Total: -1.00 -64.42 215.83 5.88 -58.54 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.27 Total: 7.58 kcal Atomic # 6 Polarization: -62.64 SS G_CDS: 2.26 Total: -60.38 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.29 Total: -58.75 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.01 kcal Total: -64.42 5.88 -58.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004699.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.453 kcal (2) G-P(sol) polarization free energy of solvation -64.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds