Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00210 * 2 1 4 4 H 1.48496 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47001 * 299.99974 * 3 2 1 6 6 H 1.48504 * 109.47013 * 59.99805 * 3 2 1 7 7 C 1.38809 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00289 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.49193 * 129.44649 * 0.02562 * 9 7 2 11 11 C 1.56746 * 99.28865 * 179.86263 * 10 9 7 12 12 C 1.55998 * 106.37026 * 41.15208 * 11 10 9 13 13 C 1.49948 * 129.50299 * 179.97438 * 9 7 2 14 14 C 1.54875 * 103.55537 * 224.04510 * 13 9 7 15 15 H 0.97004 * 119.99927 * 0.02562 * 1 2 3 16 16 H 1.09002 * 111.44402 * 62.33041 * 10 9 7 17 17 H 1.09003 * 111.44180 * 297.39599 * 10 9 7 18 18 H 1.09001 * 118.47176 * 181.28108 * 11 10 9 19 19 H 1.09003 * 114.53348 * 54.87308 * 12 11 10 20 20 H 1.09001 * 114.53179 * 188.57838 * 12 11 10 21 21 H 1.09001 * 117.96753 * 359.21470 * 13 9 7 22 22 H 1.09000 * 114.44925 * 181.58582 * 14 13 9 23 23 H 1.08996 * 114.49036 * 48.14618 * 14 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1462 -2.6328 -0.0005 11 6 -0.1419 -4.2003 -0.0035 12 6 0.9859 -4.6388 0.9810 13 6 1.8505 -3.7926 0.0005 14 6 0.9639 -4.5115 -1.0462 15 1 -0.4850 0.8401 -0.0004 16 1 -0.6159 -2.2338 -0.8996 17 1 -0.6166 -2.2373 0.8998 18 1 -1.0985 -4.7224 -0.0263 19 1 0.8987 -4.2210 1.9841 20 1 1.2050 -5.7065 0.9716 21 1 2.9312 -3.9344 -0.0127 22 1 1.1819 -5.5723 -1.1697 23 1 0.8566 -3.9778 -1.9905 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011954.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = 82.370013 kcal Electronic energy + Delta-G solvation = -8319.631325 eV Core-core repulsion = 6749.778097 eV Total energy + Delta-G solvation = -1569.853228 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.51905 -32.93725 -29.45324 -26.70510 -24.28045 -24.13694 -19.71382 -18.53476 -16.83675 -14.75193 -14.47416 -13.80539 -12.97299 -12.29694 -11.53226 -11.10265 -10.95177 -10.86548 -10.54982 -10.09369 -10.01642 -9.67283 -9.44576 -9.15064 -8.65821 -6.79924 -5.73016 -3.02553 3.41503 3.46249 3.49358 4.47883 5.25709 5.29141 5.43424 5.48823 5.84904 5.92165 6.11575 6.36247 6.59337 6.67416 6.76267 6.95032 7.07214 7.47045 7.50738 7.73342 8.09730 9.14471 9.76719 10.57948 11.43887 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.113860 B = 0.018620 C = 0.017302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 245.856726 B = 1503.416579 C = 1617.895802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.081 0.919 9 N -0.592 5.592 10 C 0.189 3.811 11 C -0.153 4.153 12 C -0.167 4.167 13 C 0.134 3.866 14 C -0.172 4.172 15 H 0.253 0.747 16 H 0.049 0.951 17 H 0.044 0.956 18 H 0.088 0.912 19 H 0.057 0.943 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.250 -6.225 -0.039 6.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.099 0.901 9 N -0.316 5.316 10 C 0.065 3.935 11 C -0.172 4.172 12 C -0.206 4.206 13 C 0.025 3.975 14 C -0.212 4.212 15 H 0.063 0.937 16 H 0.067 0.933 17 H 0.063 0.937 18 H 0.106 0.894 19 H 0.075 0.925 20 H 0.093 0.907 21 H 0.106 0.894 22 H 0.085 0.915 23 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.248 -5.880 -0.047 6.011 hybrid contribution 0.281 0.817 0.003 0.864 sum 1.529 -5.063 -0.044 5.289 Atomic orbital electron populations 1.69891 1.04976 1.25146 1.56994 1.24812 0.95758 0.97632 1.02593 0.85995 0.78682 0.83587 0.77221 1.20438 1.21748 1.21756 1.19069 0.90398 0.81758 1.43525 0.90136 1.45546 1.01866 0.98722 1.85418 1.21913 0.85309 0.86276 0.99976 1.24700 0.95260 0.99379 0.97824 1.24355 0.99651 0.98493 0.98149 1.22956 0.94917 0.85491 0.94167 1.24339 0.99978 0.98734 0.98125 0.93708 0.93263 0.93746 0.89352 0.92455 0.90687 0.89361 0.91543 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.08 11.07 55.49 0.61 -27.47 14 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 14 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 14 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 14 6 H -0.29 -7.20 7.11 56.52 0.40 -6.79 14 7 C -0.22 -6.36 10.52 -15.06 -0.16 -6.52 14 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 14 9 N -0.59 -15.99 3.46 -162.70 -0.56 -16.55 14 10 C 0.19 4.84 5.52 -0.52 0.00 4.84 14 11 C -0.15 -3.10 6.40 -92.07 -0.59 -3.69 14 12 C -0.17 -3.19 7.86 -30.28 -0.24 -3.42 14 13 C 0.13 2.92 6.60 -69.77 -0.46 2.46 14 14 C -0.17 -3.36 7.49 -31.21 -0.23 -3.59 14 15 H 0.25 7.41 8.31 -40.82 -0.34 7.07 14 16 H 0.05 1.36 7.82 -51.93 -0.41 0.95 14 17 H 0.04 1.23 7.83 -51.93 -0.41 0.82 14 18 H 0.09 1.57 8.14 -51.93 -0.42 1.15 14 19 H 0.06 1.16 8.14 -51.93 -0.42 0.74 14 20 H 0.07 1.20 7.86 -51.93 -0.41 0.79 14 21 H 0.09 1.78 8.14 -51.93 -0.42 1.36 14 22 H 0.07 1.09 7.86 -51.93 -0.41 0.68 14 23 H 0.06 1.26 8.11 -51.93 -0.42 0.84 14 LS Contribution 195.34 15.07 2.94 2.94 Total: -1.00 -30.81 195.34 -6.67 -37.48 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -2.86 Total: -3.61 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.78 Total: -10.37 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.05 Total: -44.01 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -30.81 -6.67 -37.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011954.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.854 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds