Wall clock time and date at job start Mon Mar 30 2020 01:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99790 * 2 1 4 4 H 1.48499 * 109.47168 * 239.99659 * 3 2 1 5 5 H 1.48500 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47024 * 119.99805 * 3 2 1 7 7 C 1.37879 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99847 * 0.02562 * 7 2 1 10 10 H 1.09002 * 115.55088 * 325.57626 * 9 7 2 11 11 C 1.53001 * 117.51956 * 111.28017 * 9 7 2 12 12 C 1.52999 * 60.00190 * 107.47765 * 11 9 7 13 13 H 1.09003 * 117.51973 * 252.52326 * 12 11 9 14 14 C 1.53002 * 117.49804 * 107.48732 * 12 11 9 15 15 F 1.39897 * 109.46776 * 116.38312 * 14 12 11 16 16 H 0.96997 * 120.00644 * 0.02562 * 1 2 3 17 17 H 1.09001 * 117.49733 * 214.97195 * 11 9 7 18 18 H 1.08995 * 117.49577 * 359.97438 * 11 9 7 19 19 H 1.09002 * 109.46902 * 236.37757 * 14 12 11 20 20 H 1.08996 * 109.47209 * 356.37519 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.3133 -2.5006 0.5561 11 6 1.3246 -3.3579 -1.2636 12 6 2.0732 -3.7895 -0.0011 13 1 3.1591 -3.6944 -0.0021 14 6 1.5161 -4.9831 0.7773 15 9 2.4470 -6.0272 0.7593 16 1 -0.4851 0.8400 -0.0004 17 1 0.4351 -3.9242 -1.5397 18 1 1.9177 -2.9787 -2.0958 19 1 1.3229 -4.6864 1.8083 20 1 0.5870 -5.3166 0.3152 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261188775.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:07 Heat of formation + Delta-G solvation = -45.091791 kcal Electronic energy + Delta-G solvation = -7122.228189 eV Core-core repulsion = 5426.583497 eV Total energy + Delta-G solvation = -1695.644692 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 144.065 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -46.98019 -36.30088 -32.27522 -27.09883 -25.06319 -20.56421 -19.67012 -16.67715 -15.23469 -15.08520 -14.66693 -14.31374 -12.97421 -12.21407 -11.68481 -11.03230 -10.93756 -10.77758 -10.37949 -10.13768 -9.53698 -9.11949 -8.58907 -8.31098 -6.14268 -4.14109 3.27656 3.32151 3.35069 4.34350 4.88519 5.29904 5.44783 5.58138 5.83762 6.17720 6.37573 6.69018 6.69345 6.88314 7.26410 7.55237 7.82282 8.34213 8.87067 9.46379 10.96422 Molecular weight = 144.06amu Principal moments of inertia in cm(-1) A = 0.128934 B = 0.015473 C = 0.014851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 217.113371 B = 1809.122481 C = 1884.925872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.046 3.954 10 H 0.079 0.921 11 C -0.204 4.204 12 C -0.233 4.233 13 H 0.096 0.904 14 C 0.098 3.902 15 F -0.230 7.230 16 H 0.264 0.736 17 H 0.067 0.933 18 H 0.078 0.922 19 H 0.070 0.930 20 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -3.826 0.650 4.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.027 3.973 10 H 0.097 0.903 11 C -0.242 4.242 12 C -0.252 4.252 13 H 0.114 0.886 14 C 0.043 3.957 15 F -0.212 7.212 16 H 0.074 0.926 17 H 0.086 0.914 18 H 0.097 0.903 19 H 0.088 0.912 20 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.261 -3.715 0.655 3.978 hybrid contribution 0.478 0.772 -0.135 0.918 sum 1.739 -2.943 0.520 3.458 Atomic orbital electron populations 1.69944 1.06147 1.27180 1.49098 1.25043 0.94915 0.99435 0.94250 0.86540 0.79550 0.82406 0.78854 1.20040 1.21087 1.19973 1.20655 0.92703 0.89358 1.50934 0.92221 1.19949 0.95877 0.87501 0.93955 0.90268 1.23145 1.00572 1.07423 0.93069 1.22964 0.99195 0.99003 1.03990 0.88601 1.21571 0.89265 0.83695 1.01183 1.92687 1.69422 1.60954 1.98099 0.92596 0.91431 0.90315 0.91210 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.13 55.43 0.73 -25.00 14 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 14 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 14 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 14 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 14 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 14 7 C -0.50 -13.99 9.21 -34.44 -0.32 -14.31 14 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 14 9 C 0.05 1.17 5.30 -91.77 -0.49 0.69 14 10 H 0.08 2.13 7.90 -51.93 -0.41 1.71 14 11 C -0.20 -4.68 9.88 -26.73 -0.26 -4.94 14 12 C -0.23 -5.13 5.85 -90.62 -0.53 -5.66 14 13 H 0.10 2.16 8.14 -51.93 -0.42 1.74 14 14 C 0.10 1.82 7.83 37.16 0.29 2.11 14 15 F -0.23 -4.43 17.36 2.25 0.04 -4.39 14 16 H 0.26 7.22 8.31 -40.82 -0.34 6.88 14 17 H 0.07 1.42 8.03 -51.93 -0.42 1.00 14 18 H 0.08 1.82 8.14 -51.93 -0.42 1.40 14 19 H 0.07 1.21 8.14 -51.93 -0.42 0.78 14 20 H 0.06 1.10 7.87 -51.93 -0.41 0.69 14 LS Contribution 189.22 15.07 2.85 2.85 Total: -1.00 -28.59 189.22 -4.86 -33.45 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -2.05 Total: -2.68 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.40 Total: -20.34 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.73 Total: -25.00 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.04 Total: -4.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 2.85 Total: 2.85 kcal Total: -28.59 -4.86 -33.45 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261188775.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.642 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds