Wall clock time and date at job start Mon Mar 30 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09006 * 115.54854 * 34.70032 * 9 7 2 11 11 C 1.53002 * 117.50297 * 249.02711 * 9 7 2 12 12 C 1.53005 * 117.50077 * 180.36533 * 9 7 2 13 13 H 1.08999 * 117.50051 * 214.98762 * 12 9 7 14 14 C 1.52999 * 117.49392 * 359.97438 * 12 9 7 15 15 F 1.39898 * 109.47772 * 300.00203 * 14 12 9 16 16 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 17 17 H 1.09000 * 117.49532 * 359.97438 * 11 9 7 18 18 H 1.08997 * 117.49791 * 145.02039 * 11 9 7 19 19 H 1.08999 * 109.47135 * 60.00542 * 14 12 9 20 20 H 1.09006 * 109.46765 * 179.97438 * 14 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.9840 -0.3838 0.5497 11 6 4.2128 -1.6833 -1.2746 12 6 4.2181 -2.5511 -0.0135 13 1 5.1554 -2.6337 0.5366 14 6 3.3404 -3.8043 -0.0136 15 9 2.5379 -3.8119 1.1323 16 1 -0.4850 0.8400 -0.0004 17 1 3.5841 -2.0057 -2.1046 18 1 5.1467 -1.1954 -1.5535 19 1 2.7071 -3.8043 -0.9007 20 1 3.9739 -4.6914 -0.0199 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261188776.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:08 Heat of formation + Delta-G solvation = -36.993777 kcal Electronic energy + Delta-G solvation = -7370.340655 eV Core-core repulsion = 5675.047119 eV Total energy + Delta-G solvation = -1695.293536 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 144.065 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -46.56345 -36.43782 -32.17435 -27.13058 -25.40131 -20.67174 -19.18029 -17.14279 -15.10681 -14.74717 -14.59421 -13.78883 -13.27402 -12.52448 -11.63091 -11.09903 -11.01912 -10.36917 -10.11569 -9.77653 -9.44122 -9.16032 -8.91524 -8.37464 -6.07401 -4.03921 3.31517 3.38041 3.39381 4.42874 4.73686 5.26926 5.53485 5.66766 5.85790 6.11563 6.29991 6.46455 6.61760 6.73198 6.98381 7.20462 7.74361 8.54836 8.99782 9.54023 11.04336 Molecular weight = 144.06amu Principal moments of inertia in cm(-1) A = 0.076939 B = 0.025522 C = 0.020961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.837529 B = 1096.840049 C = 1335.496460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.486 4.486 8 H 0.084 0.916 9 C -0.007 4.007 10 H 0.073 0.927 11 C -0.206 4.206 12 C -0.220 4.220 13 H 0.088 0.912 14 C 0.111 3.889 15 F -0.212 7.212 16 H 0.265 0.735 17 H 0.086 0.914 18 H 0.071 0.929 19 H 0.068 0.932 20 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 -2.460 -1.095 7.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.523 4.523 8 H 0.102 0.898 9 C -0.026 4.026 10 H 0.091 0.909 11 C -0.244 4.244 12 C -0.239 4.239 13 H 0.107 0.893 14 C 0.056 3.944 15 F -0.193 7.193 16 H 0.075 0.925 17 H 0.105 0.895 18 H 0.089 0.911 19 H 0.087 0.913 20 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.711 -2.339 -1.065 7.186 hybrid contribution 0.476 0.846 -0.023 0.972 sum 7.187 -1.492 -1.087 7.421 Atomic orbital electron populations 1.69906 1.06325 1.27098 1.50056 1.25029 0.94717 0.99186 0.94098 0.86712 0.80170 0.83319 0.78554 1.20208 1.21466 1.19039 1.20675 0.87160 0.95035 1.49387 0.89785 1.20468 0.95859 0.91450 0.94786 0.90927 1.23204 1.02261 1.06038 0.92869 1.22725 1.01290 0.94855 1.05011 0.89334 1.21149 0.91315 0.96311 0.85611 1.92756 1.75699 1.97644 1.53216 0.92526 0.89522 0.91079 0.91342 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 14 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 14 3 Si 0.88 21.75 27.75 -169.99 -4.72 17.04 14 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 14 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 14 6 H -0.27 -6.25 6.04 56.52 0.34 -5.91 14 7 C -0.49 -13.97 8.97 -34.44 -0.31 -14.28 14 8 H 0.08 2.61 6.24 -52.49 -0.33 2.28 14 9 C -0.01 -0.17 4.81 -91.77 -0.44 -0.61 14 10 H 0.07 1.77 5.92 -51.93 -0.31 1.46 14 11 C -0.21 -4.29 9.89 -26.69 -0.26 -4.56 14 12 C -0.22 -4.58 6.16 -90.58 -0.56 -5.14 14 13 H 0.09 1.65 8.14 -51.93 -0.42 1.23 14 14 C 0.11 2.20 6.85 37.16 0.25 2.46 14 15 F -0.21 -4.96 15.95 2.25 0.04 -4.92 14 16 H 0.26 7.61 8.31 -40.82 -0.34 7.27 14 17 H 0.09 1.81 8.05 -51.93 -0.42 1.39 14 18 H 0.07 1.31 8.14 -51.93 -0.42 0.89 14 19 H 0.07 1.37 7.76 -51.93 -0.40 0.97 14 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 14 LS Contribution 180.75 15.07 2.72 2.72 Total: -1.00 -30.50 180.75 -4.52 -35.02 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -1.92 Total: -2.87 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.41 Total: -20.11 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.04 Total: -4.92 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.04 kcal Total LS contribution 2.72 Total: 2.72 kcal Total: -30.50 -4.52 -35.02 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261188776.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.976 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds