Wall clock time and date at job start Mon Mar 30 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09006 * 115.54854 * 34.70032 * 9 7 2 11 11 C 1.53002 * 117.50297 * 249.02711 * 9 7 2 12 12 C 1.53005 * 117.50077 * 180.36533 * 9 7 2 13 13 H 1.08999 * 117.50051 * 214.98762 * 12 9 7 14 14 C 1.52999 * 117.49392 * 359.97438 * 12 9 7 15 15 F 1.39898 * 109.47772 * 300.00203 * 14 12 9 16 16 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 17 17 H 1.09000 * 117.49532 * 359.97438 * 11 9 7 18 18 H 1.08997 * 117.49791 * 145.02039 * 11 9 7 19 19 H 1.08999 * 109.47135 * 60.00542 * 14 12 9 20 20 H 1.09006 * 109.46765 * 179.97438 * 14 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.9840 -0.3838 0.5497 11 6 4.2128 -1.6833 -1.2746 12 6 4.2181 -2.5511 -0.0135 13 1 5.1554 -2.6337 0.5366 14 6 3.3404 -3.8043 -0.0136 15 9 2.5379 -3.8119 1.1323 16 1 -0.4850 0.8400 -0.0004 17 1 3.5841 -2.0057 -2.1046 18 1 5.1467 -1.1954 -1.5535 19 1 2.7071 -3.8043 -0.9007 20 1 3.9739 -4.6914 -0.0199 RHF calculation, no. of doubly occupied orbitals= 26 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261188776.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:08 Heat of formation + Delta-G solvation = -56.753131 kcal Electronic energy + Delta-G solvation = -7371.197485 eV Core-core repulsion = 5675.047119 eV Total energy + Delta-G solvation = -1696.150366 eV No. of doubly occupied orbitals = 26 Molecular weight (most abundant/longest-lived isotopes) = 144.065 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -48.30739 -38.20898 -34.33417 -28.93847 -27.35266 -22.40512 -21.02457 -19.16755 -16.86153 -16.57966 -16.38989 -15.58576 -15.07853 -14.58913 -13.40828 -13.03813 -12.92875 -12.03646 -11.79674 -11.73474 -11.27622 -11.13074 -10.78435 -10.37252 -8.26489 -6.27578 1.38288 1.40848 1.50560 2.38687 2.85712 3.34473 3.92313 4.10638 4.28448 4.39942 4.55930 4.83131 5.00995 5.08763 5.24845 5.47088 5.68203 6.35530 6.76032 7.33367 8.89215 Molecular weight = 144.06amu Principal moments of inertia in cm(-1) A = 0.076939 B = 0.025522 C = 0.020961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.837529 B = 1096.840049 C = 1335.496460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.492 4.492 8 H 0.042 0.958 9 C -0.051 4.051 10 H 0.078 0.922 11 C -0.180 4.180 12 C -0.204 4.204 13 H 0.121 0.879 14 C 0.099 3.901 15 F -0.236 7.236 16 H 0.266 0.734 17 H 0.080 0.920 18 H 0.106 0.894 19 H 0.057 0.943 20 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.467 -2.151 -1.446 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.169 1.169 7 C -0.530 4.530 8 H 0.061 0.939 9 C -0.070 4.070 10 H 0.096 0.904 11 C -0.218 4.218 12 C -0.223 4.223 13 H 0.139 0.861 14 C 0.044 3.956 15 F -0.218 7.218 16 H 0.075 0.925 17 H 0.098 0.902 18 H 0.125 0.875 19 H 0.075 0.925 20 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.283 -2.051 -1.420 9.612 hybrid contribution -0.317 0.622 0.076 0.703 sum 8.966 -1.428 -1.345 9.178 Atomic orbital electron populations 1.70067 1.08392 1.28171 1.52550 1.26004 0.95549 1.03552 0.94035 0.85562 0.79279 0.77862 0.79183 1.19044 1.21529 1.16881 1.20882 0.89842 0.93546 1.48693 0.93949 1.20386 0.93408 0.94554 0.98648 0.90422 1.23193 1.02557 1.04454 0.91601 1.22921 1.01587 0.93080 1.04695 0.86134 1.21490 0.91493 0.98351 0.84217 1.92707 1.76706 1.97823 1.54527 0.92486 0.90173 0.87537 0.92484 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.60 13.96 21.45 0.30 -60.30 14 2 C 0.01 0.31 5.47 84.65 0.46 0.78 14 3 Si 0.96 44.60 27.75 68.60 1.90 46.51 14 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 14 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 14 6 H -0.24 -10.47 6.04 99.48 0.60 -9.87 14 7 C -0.49 -28.69 8.97 25.60 0.23 -28.46 14 8 H 0.04 2.74 6.24 -2.91 -0.02 2.72 14 9 C -0.05 -2.41 4.81 -11.54 -0.06 -2.46 14 10 H 0.08 3.55 5.92 -2.38 -0.01 3.54 14 11 C -0.18 -6.87 9.89 30.62 0.30 -6.56 14 12 C -0.20 -7.80 6.16 -10.77 -0.07 -7.87 14 13 H 0.12 3.87 8.14 -2.39 -0.02 3.85 14 14 C 0.10 3.73 6.85 71.98 0.49 4.22 14 15 F -0.24 -11.01 15.95 44.97 0.72 -10.29 14 16 H 0.27 15.78 8.31 -92.71 -0.77 15.01 14 17 H 0.08 3.15 8.05 -2.39 -0.02 3.13 14 18 H 0.11 3.34 8.14 -2.39 -0.02 3.33 14 19 H 0.06 2.24 7.76 -2.39 -0.02 2.23 14 20 H 0.10 2.90 8.14 -2.38 -0.02 2.88 14 Total: -1.00 -66.76 180.75 5.40 -61.36 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.12 Total: 3.08 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 1.37 Total: -40.36 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.30 Total: -60.30 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 0.72 Total: -10.29 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.51 kcal Total: -66.76 5.40 -61.36 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261188776.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.604 kcal (2) G-P(sol) polarization free energy of solvation -66.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds