Wall clock time and date at job start Mon Mar 30 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86800 * 120.00292 * 2 1 4 4 H 1.48496 * 109.47477 * 85.38739 * 3 2 1 5 5 H 1.48500 * 109.47133 * 205.39094 * 3 2 1 6 6 H 1.48504 * 109.46921 * 325.38440 * 3 2 1 7 7 C 1.38973 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00200 * 160.31506 * 7 2 1 9 9 N 1.36943 * 119.99455 * 340.31647 * 7 2 1 10 10 N 1.40127 * 126.15256 * 148.39520 * 9 7 2 11 11 H 0.96991 * 125.92279 * 359.93129 * 10 9 7 12 12 C 1.36627 * 108.15732 * 179.97438 * 10 9 7 13 13 C 1.34938 * 108.42449 * 359.97438 * 12 10 9 14 14 C 1.34862 * 126.15801 * 328.07295 * 9 7 2 15 15 O 1.21810 * 126.18081 * 0.02562 * 14 9 7 16 16 H 0.96997 * 120.00010 * 359.97438 * 1 2 3 17 17 H 1.08000 * 125.78934 * 180.02562 * 12 10 9 18 18 H 1.08000 * 125.95549 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.3984 2.1027 1.3955 5 1 3.5912 1.4139 -0.6003 6 1 1.4979 2.6225 -0.7954 7 6 2.0091 -1.2035 0.0005 8 1 3.0417 -1.2310 -0.3145 9 7 1.3843 -2.3546 0.4005 10 7 1.6443 -3.6456 -0.0783 11 1 2.2995 -3.8808 -0.7536 12 6 0.8141 -4.5155 0.5704 13 6 0.0503 -3.8132 1.4330 14 6 0.4123 -2.4505 1.3305 15 8 -0.0685 -1.5291 1.9658 16 1 -0.4850 0.8400 0.0004 17 1 0.7763 -5.5842 0.4191 18 1 -0.7040 -4.2214 2.0894 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261194794.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:04 Heat of formation + Delta-G solvation = 51.662576 kcal Electronic energy + Delta-G solvation = -8200.360285 eV Core-core repulsion = 6427.916477 eV Total energy + Delta-G solvation = -1772.443808 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.78590 -34.95793 -33.23924 -30.23783 -28.37035 -24.96484 -20.56389 -19.89248 -17.92963 -16.00364 -14.81656 -13.85681 -13.69505 -13.40803 -12.24947 -12.16042 -11.55597 -11.04120 -10.81251 -10.67370 -10.37531 -9.14155 -8.12483 -7.57931 -6.54577 -6.20676 -4.02631 3.00223 3.17433 3.23264 3.29888 3.52971 4.28221 4.94086 5.37797 5.66416 5.86431 6.85252 7.10296 7.24942 7.36404 8.07491 8.15058 8.82517 9.42101 9.50079 10.52725 10.74275 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.100783 B = 0.022803 C = 0.019901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.758877 B = 1227.637969 C = 1406.636449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.055 3.945 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.281 1.281 7 C -0.343 4.343 8 H 0.092 0.908 9 N -0.246 5.246 10 N -0.520 5.520 11 H 0.416 0.584 12 C 0.085 3.915 13 C -0.353 4.353 14 C 0.491 3.509 15 O -0.567 6.567 16 H 0.273 0.727 17 H 0.160 0.840 18 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -4.872 -2.232 6.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.472 4.472 8 H 0.110 0.890 9 N -0.054 5.054 10 N -0.234 5.234 11 H 0.258 0.742 12 C -0.053 4.053 13 C -0.387 4.387 14 C 0.288 3.712 15 O -0.449 6.449 16 H 0.083 0.917 17 H 0.177 0.823 18 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.522 -4.065 -2.006 5.740 hybrid contribution 0.601 0.360 -0.529 0.878 sum 4.123 -3.705 -2.535 6.095 Atomic orbital electron populations 1.70010 1.06478 1.28305 1.37353 1.25468 0.95302 0.99936 0.95452 0.85793 0.78864 0.80372 0.78661 1.19801 1.19416 1.20667 1.19339 0.94591 0.81524 1.51786 0.89038 1.44582 1.35602 0.94760 1.30468 1.45053 1.37914 1.00849 1.39580 0.74168 1.21886 0.92014 0.94663 0.96772 1.21777 1.10326 0.95957 1.10609 1.16355 0.82511 0.89435 0.82889 1.90650 1.58244 1.45697 1.50285 0.91675 0.82296 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -24.50 11.20 55.50 0.62 -23.88 13 2 C 0.05 1.57 4.90 -17.45 -0.09 1.48 13 3 Si 0.94 21.52 29.60 -169.99 -5.03 16.49 13 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 13 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 13 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 13 7 C -0.34 -9.75 10.27 -15.00 -0.15 -9.90 13 8 H 0.09 2.38 7.91 -52.49 -0.41 1.96 13 9 N -0.25 -6.88 3.62 -13.64 -0.05 -6.93 13 10 N -0.52 -11.13 7.22 30.69 0.22 -10.90 13 11 H 0.42 7.12 8.96 -182.59 -1.64 5.49 13 12 C 0.09 1.65 11.98 -16.59 -0.20 1.45 13 13 C -0.35 -8.46 10.83 -39.56 -0.43 -8.88 13 14 C 0.49 14.71 7.24 -15.03 -0.11 14.60 13 15 O -0.57 -19.29 15.49 5.09 0.08 -19.21 13 16 H 0.27 7.88 8.31 -40.82 -0.34 7.54 13 17 H 0.16 2.11 8.06 -52.49 -0.42 1.69 13 18 H 0.13 2.88 8.06 -52.49 -0.42 2.46 13 LS Contribution 174.97 15.07 2.64 2.64 Total: -1.00 -36.58 174.97 -4.53 -41.10 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -2.03 Total: 1.95 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.98 Total: -1.25 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.79 Total: -41.72 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.08 Total: -19.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 2.64 Total: 2.64 kcal Total: -36.58 -4.53 -41.10 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261194794.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.767 kcal (2) G-P(sol) polarization free energy of solvation -36.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds