Wall clock time and date at job start Mon Mar 30 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86806 * 119.99925 * 2 1 4 4 H 1.48495 * 109.47194 * 268.61166 * 3 2 1 5 5 H 1.48496 * 109.47020 * 28.61077 * 3 2 1 6 6 H 1.48498 * 109.47306 * 148.61070 * 3 2 1 7 7 C 1.38859 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99922 * 189.61563 * 7 2 1 9 9 N 1.37521 * 120.00439 * 9.61560 * 7 2 1 10 10 C 1.37773 * 126.55425 * 17.49202 * 9 7 2 11 11 C 1.34475 * 106.96999 * 180.15854 * 10 9 7 12 12 N 1.34452 * 108.46905 * 359.58402 * 11 10 9 13 13 C 1.31214 * 109.37252 * 0.26420 * 12 11 10 14 14 N 1.38264 * 125.85031 * 179.97438 * 13 12 11 15 15 H 0.96995 * 120.00683 * 359.97438 * 1 2 3 16 16 H 1.08004 * 126.51063 * 0.03633 * 10 9 7 17 17 H 1.08004 * 125.75947 * 179.84836 * 11 10 9 18 18 H 0.96997 * 119.99889 * 0.03281 * 14 13 12 19 19 H 0.96995 * 119.99608 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.5248 2.0295 -1.3996 5 1 1.4310 2.6610 0.6704 6 1 3.5305 1.4490 0.7292 7 6 2.0082 -1.2025 0.0005 8 1 3.0769 -1.2090 0.1568 9 7 1.3352 -2.3853 -0.1979 10 6 0.0740 -2.5320 -0.7326 11 6 -0.1973 -3.8491 -0.7426 12 7 0.8625 -4.5061 -0.2395 13 6 1.7925 -3.6422 0.0929 14 7 3.0233 -3.9489 0.6431 15 1 -0.4851 0.8399 0.0004 16 1 -0.5743 -1.7396 -1.0765 17 1 -1.1104 -4.3027 -1.0988 18 1 3.2609 -4.8735 0.8147 19 1 3.6490 -3.2395 0.8574 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575565678.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:07 Heat of formation + Delta-G solvation = 59.799012 kcal Electronic energy + Delta-G solvation = -7981.981720 eV Core-core repulsion = 6307.609396 eV Total energy + Delta-G solvation = -1674.372324 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 153.060 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.06174 -33.80104 -32.93232 -30.62777 -26.44603 -24.99564 -20.22272 -19.33863 -17.82258 -15.79652 -15.16128 -14.47440 -13.62265 -13.53031 -12.22475 -11.86783 -11.75044 -11.29388 -10.76290 -10.56878 -9.74789 -9.17053 -8.35551 -8.20300 -6.67998 -6.02563 -4.32351 2.98074 3.05649 3.09211 3.83142 3.96888 4.55528 4.73044 5.05743 5.48917 6.65516 6.87329 7.16270 7.43197 7.65981 7.94094 8.36112 8.47384 8.81095 8.87725 9.69103 9.93124 10.39785 Molecular weight = 153.06amu Principal moments of inertia in cm(-1) A = 0.086441 B = 0.021897 C = 0.017843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.842472 B = 1278.378588 C = 1568.838850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.045 3.955 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.347 4.347 8 H 0.102 0.898 9 N -0.300 5.300 10 C -0.040 4.040 11 C -0.091 4.091 12 N -0.561 5.561 13 C 0.382 3.618 14 N -0.852 5.852 15 H 0.276 0.724 16 H 0.171 0.829 17 H 0.142 0.858 18 H 0.401 0.599 19 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 1.230 0.129 3.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.164 4.164 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.119 0.881 9 N 0.025 4.975 10 C -0.179 4.179 11 C -0.240 4.240 12 N -0.291 5.291 13 C 0.031 3.969 14 N -0.408 5.408 15 H 0.087 0.913 16 H 0.188 0.812 17 H 0.160 0.840 18 H 0.230 0.770 19 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.398 0.725 0.202 3.481 hybrid contribution 0.561 1.701 0.116 1.795 sum 3.959 2.426 0.318 4.654 Atomic orbital electron populations 1.69929 1.06258 1.28398 1.43328 1.25446 0.95677 1.00337 0.94895 0.85760 0.79167 0.79865 0.78858 1.19719 1.20337 1.19137 1.19673 0.93216 0.82373 1.52258 0.88052 1.41345 1.12558 1.04086 1.39496 1.22554 0.89494 0.97561 1.08309 1.21467 0.98563 0.91193 1.12736 1.70026 1.01989 1.31410 1.25667 1.19378 0.90371 0.82107 1.05075 1.40304 1.14708 1.09658 1.76136 0.91307 0.81180 0.84013 0.77016 0.77613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.75 10.82 55.49 0.60 -22.15 13 2 C 0.05 1.17 5.39 -17.51 -0.09 1.07 13 3 Si 0.94 19.32 29.56 -169.99 -5.03 14.29 13 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 13 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 13 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 13 7 C -0.35 -9.29 9.91 -14.77 -0.15 -9.44 13 8 H 0.10 2.50 7.31 -52.48 -0.38 2.12 13 9 N -0.30 -8.36 2.95 -62.39 -0.18 -8.54 13 10 C -0.04 -1.09 10.20 -16.21 -0.17 -1.26 13 11 C -0.09 -2.38 11.84 -17.73 -0.21 -2.59 13 12 N -0.56 -15.08 11.28 -13.73 -0.15 -15.24 13 13 C 0.38 9.99 9.01 -318.75 -2.87 7.12 13 14 N -0.85 -17.60 9.05 30.33 0.27 -17.32 13 15 H 0.28 6.84 8.31 -40.82 -0.34 6.50 13 16 H 0.17 4.68 6.36 -52.48 -0.33 4.35 13 17 H 0.14 3.21 8.06 -52.48 -0.42 2.79 13 18 H 0.40 7.11 8.95 -40.82 -0.37 6.75 13 19 H 0.40 7.40 8.15 -40.82 -0.33 7.07 13 LS Contribution 178.47 15.07 2.69 2.69 Total: -1.00 -30.83 178.47 -6.26 -37.09 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.97 Total: 14.28 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.49 Total: -5.09 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.54 Total: -63.25 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 2.69 Total: 2.69 kcal Total: -30.83 -6.26 -37.09 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575565678.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.887 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds