Wall clock time and date at job start Mon Mar 30 2020 01:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34805 * 125.90530 * 2 1 4 4 C 1.41172 * 107.50489 * 179.97438 * 3 2 1 5 5 C 1.34806 * 107.50791 * 0.02562 * 4 3 2 6 6 N 1.36844 * 125.90577 * 179.69069 * 2 1 3 7 7 C 1.37497 * 125.69504 * 0.02562 * 6 2 1 8 8 H 1.08001 * 119.99645 * 19.40791 * 7 6 2 9 9 C 1.38913 * 119.99853 * 199.41429 * 7 6 2 10 10 N 1.31362 * 120.00646 * 10.29036 * 9 7 6 11 11 Si 1.86811 * 119.99728 * 190.29135 * 9 7 6 12 12 H 1.48496 * 109.46895 * 89.99910 * 11 9 7 13 13 H 1.48504 * 109.46898 * 209.99654 * 11 9 7 14 14 H 1.48495 * 109.46899 * 330.00110 * 11 9 7 15 15 H 1.08994 * 109.47052 * 90.01849 * 1 2 3 16 16 H 1.09007 * 109.46901 * 330.02371 * 1 2 3 17 17 H 1.08992 * 109.47142 * 210.02554 * 1 2 3 18 18 H 1.07995 * 126.24984 * 359.95623 * 3 2 1 19 19 H 1.08003 * 126.24669 * 179.97438 * 4 3 2 20 20 H 1.08007 * 125.90587 * 179.97438 * 5 4 3 21 21 H 0.96996 * 119.99967 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0919 0.0000 4 6 3.6371 0.6463 0.0006 5 6 3.6161 -0.7016 0.0004 6 7 2.3096 -1.1084 0.0060 7 6 1.8756 -2.4131 0.0125 8 1 0.8682 -2.6485 -0.2974 9 6 2.7328 -3.4281 0.4179 10 7 3.8808 -3.1318 0.9836 11 14 2.2532 -5.2149 0.1586 12 1 2.7413 -5.6710 -1.1676 13 1 2.8623 -6.0506 1.2245 14 1 0.7748 -5.3434 0.2129 15 1 -0.3633 -0.0003 -1.0276 16 1 -0.3633 0.8903 0.5135 17 1 -0.3633 -0.8897 0.5142 18 1 1.9667 2.1199 -0.0007 19 1 4.5180 1.2712 0.0004 20 1 4.4810 -1.3486 0.0003 21 1 4.4795 -3.8406 1.2663 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606242053.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:42 Heat of formation + Delta-G solvation = 35.798175 kcal Electronic energy + Delta-G solvation = -7772.626740 eV Core-core repulsion = 6228.065484 eV Total energy + Delta-G solvation = -1544.561256 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 151.069 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.46358 -33.38427 -30.26877 -29.78785 -24.71327 -24.41318 -19.48690 -18.59135 -16.65202 -15.22529 -14.39083 -13.31443 -12.64359 -12.42019 -11.84031 -11.56070 -11.37310 -11.16027 -10.71282 -10.50093 -10.29389 -10.20379 -9.17451 -7.50146 -6.65606 -6.29267 -4.25933 2.99946 3.08205 3.12098 3.86053 3.95887 4.52532 5.07063 5.29846 6.30808 6.42538 6.52329 6.71791 6.85474 7.10250 7.17583 7.36148 7.76654 7.88022 8.04088 8.65134 8.74719 9.32889 9.76381 10.41998 Molecular weight = 151.07amu Principal moments of inertia in cm(-1) A = 0.082585 B = 0.022025 C = 0.017877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.962126 B = 1270.953170 C = 1565.898881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.062 4.062 3 C -0.234 4.234 4 C -0.266 4.266 5 C -0.001 4.001 6 N -0.255 5.255 7 C -0.346 4.346 8 H 0.103 0.897 9 C 0.043 3.957 10 N -0.846 5.846 11 Si 0.937 3.063 12 H -0.271 1.271 13 H -0.278 1.278 14 H -0.266 1.266 15 H 0.046 0.954 16 H 0.056 0.944 17 H 0.053 0.947 18 H 0.105 0.895 19 H 0.106 0.894 20 H 0.160 0.840 21 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.826 -0.597 -1.253 3.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.178 4.178 3 C -0.259 4.259 4 C -0.290 4.290 5 C -0.139 4.139 6 N 0.086 4.914 7 C -0.474 4.474 8 H 0.121 0.879 9 C -0.166 4.166 10 N -0.478 5.478 11 Si 0.762 3.238 12 H -0.197 1.197 13 H -0.203 1.203 14 H -0.190 1.190 15 H 0.065 0.935 16 H 0.075 0.925 17 H 0.072 0.928 18 H 0.123 0.877 19 H 0.124 0.876 20 H 0.177 0.823 21 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.777 -1.083 -1.141 3.191 hybrid contribution -0.023 -0.796 0.013 0.796 sum -2.799 -1.878 -1.129 3.555 Atomic orbital electron populations 1.19929 0.90705 1.01017 1.00135 1.20005 0.92435 0.86982 1.18354 1.20091 0.93298 0.95564 1.16970 1.20441 0.95672 0.94249 1.18674 1.21906 0.87655 0.93841 1.10492 1.40230 1.04694 1.03894 1.42586 1.19880 1.00717 0.80815 1.45951 0.87892 1.25513 0.95517 1.01397 0.94145 1.69944 1.09690 1.34336 1.33844 0.85776 0.79208 0.80347 0.78481 1.19682 1.20336 1.19029 0.93521 0.92538 0.92769 0.87686 0.87562 0.82283 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.26 10.00 36.01 0.36 -0.90 14 2 C -0.06 -1.60 6.86 -81.57 -0.56 -2.16 14 3 C -0.23 -5.91 10.77 -39.69 -0.43 -6.34 14 4 C -0.27 -6.96 10.86 -39.69 -0.43 -7.39 14 5 C 0.00 -0.03 10.05 -16.53 -0.17 -0.19 14 6 N -0.25 -7.25 2.90 -57.81 -0.17 -7.42 14 7 C -0.35 -9.57 9.62 -14.76 -0.14 -9.71 14 8 H 0.10 2.68 7.46 -52.49 -0.39 2.29 14 9 C 0.04 1.13 5.37 -17.50 -0.09 1.04 14 10 N -0.85 -23.27 10.84 55.49 0.60 -22.67 14 11 Si 0.94 19.78 29.56 -169.99 -5.03 14.75 14 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 14 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 14 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 15 H 0.05 0.89 8.14 -51.93 -0.42 0.47 14 16 H 0.06 1.03 8.14 -51.93 -0.42 0.61 14 17 H 0.05 1.12 7.61 -51.93 -0.40 0.73 14 18 H 0.11 2.34 8.06 -52.49 -0.42 1.92 14 19 H 0.11 2.48 8.06 -52.48 -0.42 2.05 14 20 H 0.16 4.53 6.36 -52.48 -0.33 4.20 14 21 H 0.28 6.98 8.31 -40.82 -0.34 6.64 14 LS Contribution 190.28 15.07 2.87 2.87 Total: -1.00 -29.75 190.28 -5.13 -34.88 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -1.95 Total: 3.24 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -1.46 Total: -25.65 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.43 Total: -30.09 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 2.87 Total: 2.87 kcal Total: -29.75 -5.13 -34.88 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606242053.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.679 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds