Wall clock time and date at job start Mon Mar 30 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 N 1.35502 * 179.97438 * 2 1 4 4 C 1.37001 * 119.99714 * 286.05723 * 3 2 1 5 5 H 1.07998 * 119.99968 * 204.20849 * 4 3 2 6 6 C 1.38884 * 120.00054 * 24.21459 * 4 3 2 7 7 N 1.31484 * 120.00077 * 167.54425 * 6 4 3 8 8 Si 1.86805 * 120.00115 * 347.54128 * 6 4 3 9 9 H 1.48497 * 109.47079 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46943 * 300.00396 * 8 6 4 11 11 H 1.48504 * 109.46732 * 59.99909 * 8 6 4 12 12 C 1.46493 * 120.00187 * 106.05434 * 3 2 1 13 13 C 1.53006 * 117.49948 * 8.62629 * 12 3 2 14 14 C 1.53001 * 117.50081 * 300.00300 * 12 3 2 15 15 H 0.97001 * 119.99690 * 354.79187 * 7 6 4 16 16 H 1.09001 * 115.54977 * 154.32899 * 12 3 2 17 17 H 1.09007 * 117.49766 * 359.97438 * 13 12 3 18 18 H 1.08997 * 117.49916 * 145.01267 * 13 12 3 19 19 H 1.09002 * 117.50147 * 214.97387 * 14 12 3 20 20 H 1.08999 * 117.49650 * 359.97438 * 14 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 7 2.4911 0.0006 0.0000 4 6 3.1762 -0.3273 1.1402 5 1 4.1848 0.0304 1.2859 6 6 2.5737 -1.1197 2.1087 7 7 3.2964 -1.6370 3.0777 8 14 0.7366 -1.4504 2.0349 9 1 0.3434 -2.3167 3.1750 10 1 -0.0014 -0.1641 2.1135 11 1 0.4075 -2.1325 0.7575 12 6 3.2234 0.3518 -1.2192 13 6 2.4144 0.9018 -2.3956 14 6 2.9894 -0.5147 -2.4583 15 1 4.2603 -1.5287 3.0747 16 1 4.2259 0.7517 -1.0667 17 1 1.3371 1.0019 -2.2626 18 1 2.8845 1.6638 -3.0172 19 1 3.8378 -0.6846 -3.1212 20 1 2.2908 -1.3463 -2.3662 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606242151.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:49 Heat of formation + Delta-G solvation = 64.171668 kcal Electronic energy + Delta-G solvation = -7830.922913 eV Core-core repulsion = 6222.166112 eV Total energy + Delta-G solvation = -1608.756800 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.96083 -36.96012 -35.60286 -33.21250 -26.20121 -23.97851 -23.22665 -20.88395 -18.28383 -17.78810 -16.46359 -15.48977 -15.26367 -14.81822 -14.40251 -13.97229 -13.43878 -12.59305 -12.41989 -12.37928 -11.61984 -11.39393 -11.07120 -10.96221 -9.60243 -8.93349 -6.11694 1.29625 1.31724 1.45668 1.75981 2.08928 2.12766 2.30931 2.83566 3.07126 3.79940 4.02580 4.13860 4.73630 4.88308 5.05451 5.22799 5.30223 5.61863 6.10963 6.73178 7.13975 7.57489 8.49157 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.069900 B = 0.026997 C = 0.021144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.475085 B = 1036.886410 C = 1323.934658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.382 3.618 3 N -0.428 5.428 4 C -0.379 4.379 5 H 0.105 0.895 6 C -0.019 4.019 7 N -0.915 5.915 8 Si 1.073 2.927 9 H -0.288 1.288 10 H -0.279 1.279 11 H -0.294 1.294 12 C 0.084 3.916 13 C -0.182 4.182 14 C -0.191 4.191 15 H 0.273 0.727 16 H 0.154 0.846 17 H 0.072 0.928 18 H 0.141 0.859 19 H 0.135 0.865 20 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 3.384 -9.418 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.222 5.222 2 C -0.013 4.013 3 N -0.141 5.141 4 C -0.507 4.507 5 H 0.122 0.878 6 C -0.222 4.222 7 N -0.551 5.551 8 Si 0.904 3.096 9 H -0.215 1.215 10 H -0.206 1.206 11 H -0.222 1.222 12 C -0.020 4.020 13 C -0.220 4.220 14 C -0.231 4.231 15 H 0.084 0.916 16 H 0.171 0.829 17 H 0.090 0.910 18 H 0.159 0.841 19 H 0.153 0.847 20 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.674 2.667 -8.568 8.999 hybrid contribution 1.684 0.586 -0.433 1.835 sum 1.010 3.254 -9.001 9.624 Atomic orbital electron populations 1.81608 1.07261 1.27590 1.05770 1.23885 0.88420 0.92531 0.96464 1.40244 0.93612 1.69260 1.10988 1.20624 1.00935 1.31224 0.97880 0.87780 1.26637 1.08103 0.93313 0.94169 1.70857 1.08362 1.41909 1.34018 0.83372 0.72850 0.77694 0.75657 1.21542 1.20636 1.22193 1.22023 0.97286 1.04202 0.78504 1.23436 0.99288 0.98379 1.00903 1.23550 1.04294 0.93671 1.01572 0.91619 0.82905 0.90986 0.84129 0.84698 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.12 14.84 17.22 0.26 -25.86 14 2 C 0.38 18.99 9.46 184.39 1.74 20.74 14 3 N -0.43 -20.14 2.98 -373.23 -1.11 -21.25 14 4 C -0.38 -20.04 10.17 84.04 0.85 -19.18 14 5 H 0.10 5.42 8.06 -2.91 -0.02 5.40 14 6 C -0.02 -1.08 5.50 84.90 0.47 -0.61 14 7 N -0.91 -54.20 13.69 21.66 0.30 -53.90 14 8 Si 1.07 57.09 23.97 68.60 1.64 58.73 14 9 H -0.29 -15.08 7.11 99.48 0.71 -14.37 14 10 H -0.28 -14.98 6.14 99.48 0.61 -14.37 14 11 H -0.29 -15.72 6.51 99.48 0.65 -15.08 14 12 C 0.08 2.93 6.53 45.00 0.29 3.23 14 13 C -0.18 -5.18 9.84 30.60 0.30 -4.88 14 14 C -0.19 -5.61 10.26 30.60 0.31 -5.30 14 15 H 0.27 15.56 8.73 -92.71 -0.81 14.75 14 16 H 0.15 4.51 8.14 -2.39 -0.02 4.49 14 17 H 0.07 2.39 7.11 -2.38 -0.02 2.38 14 18 H 0.14 2.85 8.14 -2.39 -0.02 2.83 14 19 H 0.13 2.93 8.14 -2.39 -0.02 2.91 14 20 H 0.07 2.39 8.14 -2.39 -0.02 2.37 14 Total: -1.00 -63.06 183.47 6.10 -56.97 By element: Atomic # 1 Polarization: -9.72 SS G_CDS: 1.04 Total: -8.69 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 3.97 Total: -6.00 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -0.56 Total: -101.01 kcal Atomic # 14 Polarization: 57.09 SS G_CDS: 1.64 Total: 58.73 kcal Total: -63.06 6.10 -56.97 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606242151.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.139 kcal (2) G-P(sol) polarization free energy of solvation -63.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds