Wall clock time and date at job start Mon Mar 30 2020 02:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 115.54624 * 2 1 4 4 C 1.53001 * 109.47355 * 34.33312 * 3 2 1 5 5 C 1.50694 * 109.47168 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 4 10 10 H 1.48498 * 109.46909 * 90.00086 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99996 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00101 * 9 7 5 13 13 C 1.52995 * 117.52135 * 145.70249 * 2 1 3 14 14 C 1.53001 * 117.49737 * 214.33431 * 2 1 3 15 15 H 1.08998 * 109.47051 * 85.58629 * 1 2 3 16 16 H 1.08998 * 109.46787 * 205.58159 * 1 2 3 17 17 H 1.08999 * 109.47242 * 325.58088 * 1 2 3 18 18 H 1.09000 * 109.46966 * 274.32999 * 3 2 1 19 19 H 1.09002 * 109.46807 * 154.33021 * 3 2 1 20 20 H 1.08998 * 109.46837 * 59.99832 * 4 3 2 21 21 H 1.09002 * 109.46926 * 299.99636 * 4 3 2 22 22 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 23 23 H 1.08994 * 117.50162 * 214.97061 * 13 2 1 24 24 H 1.09000 * 117.50075 * 359.97438 * 13 2 1 25 25 H 1.08995 * 117.50148 * 359.97436 * 14 2 1 26 26 H 1.09007 * 117.49510 * 144.99703 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3351 2.3543 0.8136 5 6 1.9853 3.7137 0.8141 6 1 2.9154 3.8678 0.2872 7 6 1.3927 4.7611 1.4872 8 7 0.2604 4.5735 2.1292 9 14 2.2027 6.4444 1.4942 10 1 1.7107 7.2352 0.3376 11 1 1.8654 7.1507 2.7562 12 1 3.6758 6.2853 1.3944 13 6 2.2370 -1.1209 0.7646 14 6 2.2365 -1.1207 -0.7655 15 1 -0.3633 0.0791 -1.0246 16 1 -0.3633 -0.9269 0.4437 17 1 -0.3634 0.8477 0.5809 18 1 2.2765 1.7417 -1.0247 19 1 3.1822 1.3087 0.4452 20 1 1.2485 1.9930 1.8383 21 1 0.3427 2.4260 0.3684 22 1 -0.1566 5.3105 2.6024 23 1 3.1722 -0.8750 1.2676 24 1 1.6122 -1.8585 1.2682 25 1 1.6113 -1.8582 -1.2687 26 1 3.1714 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685947759.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:57 Heat of formation + Delta-G solvation = -16.935029 kcal Electronic energy + Delta-G solvation = -8188.270895 eV Core-core repulsion = 6652.225910 eV Total energy + Delta-G solvation = -1536.044986 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.22662 -35.35939 -32.48952 -29.14664 -27.13362 -23.50602 -23.06490 -19.53755 -18.49253 -16.53841 -16.10785 -15.47549 -14.90547 -14.19136 -13.80505 -13.49550 -13.06012 -12.88267 -12.48504 -12.31098 -11.96221 -11.84020 -11.77643 -11.10593 -10.73697 -10.51027 -10.27128 -8.19121 -6.30258 1.39290 1.41067 1.52136 2.41222 2.96908 3.13412 3.92709 3.98895 4.17314 4.33486 4.72790 4.81301 4.81804 5.02612 5.09558 5.10790 5.17423 5.33637 5.40949 5.43801 5.56550 5.81518 5.87642 6.28144 6.87308 7.38581 8.92531 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.105783 B = 0.012764 C = 0.012015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.630489 B = 2193.145091 C = 2329.956193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.146 4.146 3 C -0.066 4.066 4 C 0.030 3.970 5 C -0.548 4.548 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.265 1.265 13 C -0.176 4.176 14 C -0.162 4.162 15 H 0.060 0.940 16 H 0.066 0.934 17 H 0.045 0.955 18 H 0.049 0.951 19 H 0.046 0.954 20 H -0.013 1.013 21 H 0.003 0.997 22 H 0.264 0.736 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -7.746 -3.937 9.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.146 4.146 3 C -0.104 4.104 4 C -0.006 4.006 5 C -0.586 4.586 6 H 0.075 0.925 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.189 1.189 13 C -0.213 4.213 14 C -0.199 4.199 15 H 0.079 0.921 16 H 0.085 0.915 17 H 0.064 0.936 18 H 0.067 0.933 19 H 0.065 0.935 20 H 0.005 0.995 21 H 0.021 0.979 22 H 0.072 0.928 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.595 -7.668 -3.831 8.956 hybrid contribution 0.139 1.021 0.287 1.069 sum 2.734 -6.647 -3.544 8.014 Atomic orbital electron populations 1.21392 0.92458 1.01721 1.01718 1.21626 0.95158 0.91100 1.06752 1.21015 0.97740 0.92494 0.99135 1.19010 0.94849 0.92945 0.93839 1.21779 1.08248 0.96416 1.32180 0.92539 1.25987 0.95554 1.03453 0.94839 1.70101 1.19210 1.33359 1.34617 0.85451 0.79040 0.78838 0.77740 1.19633 1.20606 1.18883 1.23173 1.02315 1.00963 0.94881 1.23073 1.02394 1.00516 0.93875 0.92079 0.91471 0.93566 0.93269 0.93507 0.99470 0.97912 0.92775 0.89439 0.87933 0.87337 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 9.49 71.98 0.68 -3.37 15 2 C -0.15 -5.23 2.47 -52.18 -0.13 -5.36 15 3 C -0.07 -2.91 5.34 30.59 0.16 -2.74 15 4 C 0.03 1.67 3.98 29.85 0.12 1.79 15 5 C -0.55 -32.36 9.11 25.60 0.23 -32.13 15 6 H 0.06 3.21 7.74 -2.91 -0.02 3.19 15 7 C 0.00 -0.04 5.46 84.66 0.46 0.42 15 8 N -0.93 -57.93 13.29 21.45 0.28 -57.64 15 9 Si 0.97 45.16 29.54 68.60 2.03 47.19 15 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 12 H -0.26 -11.86 7.11 99.48 0.71 -11.16 15 13 C -0.18 -5.29 9.82 30.59 0.30 -4.99 15 14 C -0.16 -4.46 9.97 30.60 0.31 -4.16 15 15 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 16 H 0.07 1.98 7.90 -2.39 -0.02 1.96 15 17 H 0.05 1.93 5.59 -2.39 -0.01 1.92 15 18 H 0.05 2.11 8.14 -2.39 -0.02 2.09 15 19 H 0.05 2.01 7.90 -2.39 -0.02 1.99 15 20 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 15 21 H 0.00 0.15 6.45 -2.39 -0.02 0.14 15 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 15 23 H 0.09 2.64 8.05 -2.39 -0.02 2.62 15 24 H 0.10 2.71 8.05 -2.39 -0.02 2.69 15 25 H 0.11 2.51 8.14 -2.39 -0.02 2.50 15 26 H 0.10 2.50 8.14 -2.38 -0.02 2.48 15 Total: -1.00 -64.04 220.48 5.57 -58.47 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.13 Total: 2.52 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 2.14 Total: -50.54 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.28 Total: -57.64 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.04 5.57 -58.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685947759.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.531 kcal (2) G-P(sol) polarization free energy of solvation -64.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds