Wall clock time and date at job start Mon Mar 30 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99420 * 2 1 4 4 H 1.48491 * 109.47072 * 269.99631 * 3 2 1 5 5 H 1.48495 * 109.47215 * 30.00383 * 3 2 1 6 6 H 1.48509 * 109.46620 * 150.00140 * 3 2 1 7 7 C 1.38806 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99698 * 170.42302 * 7 2 1 9 9 N 1.36936 * 120.00302 * 350.42446 * 7 2 1 10 10 C 1.48101 * 126.94497 * 343.53035 * 9 7 2 11 11 C 1.54963 * 103.25964 * 219.01039 * 10 9 7 12 12 C 1.54704 * 102.86968 * 322.35177 * 11 10 9 13 13 H 1.08996 * 117.82781 * 162.59927 * 12 11 10 14 14 C 1.53290 * 117.45224 * 319.44134 * 12 11 10 15 15 C 1.47379 * 126.94820 * 163.49734 * 9 7 2 16 16 H 1.09002 * 117.18213 * 14.60206 * 15 9 7 17 17 H 0.96995 * 120.00594 * 359.97438 * 1 2 3 18 18 H 1.08991 * 110.66394 * 100.56376 * 10 9 7 19 19 H 1.09005 * 110.65845 * 337.44981 * 10 9 7 20 20 H 1.08995 * 110.76348 * 80.74676 * 11 10 9 21 21 H 1.08999 * 110.76029 * 203.95908 * 11 10 9 22 22 H 1.08999 * 117.43644 * 343.98850 * 14 12 11 23 23 H 1.08992 * 117.36337 * 199.38895 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0790 -1.2086 -0.1551 9 7 1.3400 -2.3797 0.1983 10 6 -0.0236 -2.5457 0.7520 11 6 0.1055 -3.8072 1.6426 12 6 1.0602 -4.7096 0.8255 13 1 1.5493 -5.5340 1.3442 14 6 0.8594 -4.7582 -0.6934 15 6 1.8294 -3.7381 -0.0973 16 1 2.8973 -3.8532 -0.2830 17 1 -0.4851 0.8400 0.0004 18 1 -0.7457 -2.7115 -0.0474 19 1 -0.3036 -1.6790 1.3509 20 1 0.5439 -3.5553 2.6082 21 1 -0.8637 -4.2885 1.7735 22 1 -0.0851 -4.3829 -1.0874 23 1 1.2876 -5.6058 -1.2285 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685966689.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:07 Heat of formation + Delta-G solvation = 53.458627 kcal Electronic energy + Delta-G solvation = -8268.536688 eV Core-core repulsion = 6697.429768 eV Total energy + Delta-G solvation = -1571.106920 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.37762 -33.09332 -29.93394 -28.83676 -24.40019 -22.56164 -19.35702 -18.97120 -16.91945 -15.15374 -14.30652 -13.77076 -13.10058 -12.11032 -11.93502 -11.35568 -11.14996 -10.85506 -10.64288 -10.08811 -9.80206 -9.75510 -9.43129 -9.12130 -8.45681 -6.71245 -5.82834 -3.17378 3.36813 3.42185 3.44874 4.43413 4.72337 5.32798 5.47709 5.74677 5.83525 6.01071 6.18436 6.37019 6.49779 6.68385 6.71788 6.96772 7.08822 7.42200 7.57914 7.72216 8.21082 9.09308 9.72490 10.47534 11.29840 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.104014 B = 0.018619 C = 0.017321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.130874 B = 1503.449603 C = 1616.155593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.004 4.004 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.558 5.558 10 C 0.153 3.847 11 C -0.113 4.113 12 C -0.217 4.217 13 H 0.095 0.905 14 C -0.203 4.203 15 C 0.109 3.891 16 H 0.102 0.898 17 H 0.256 0.744 18 H 0.025 0.975 19 H 0.086 0.914 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.083 0.917 23 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -4.953 1.297 5.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.275 5.275 10 C 0.028 3.972 11 C -0.151 4.151 12 C -0.238 4.238 13 H 0.113 0.887 14 C -0.244 4.244 15 C -0.002 4.002 16 H 0.120 0.880 17 H 0.066 0.934 18 H 0.043 0.957 19 H 0.104 0.896 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.101 0.899 23 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.327 -4.588 1.302 4.950 hybrid contribution 0.277 0.687 -0.133 0.753 sum 1.604 -3.900 1.169 4.376 Atomic orbital electron populations 1.69938 1.05208 1.25632 1.54982 1.25001 0.95661 0.98272 1.01219 0.86074 0.78789 0.82896 0.77713 1.21329 1.21472 1.20385 1.19080 0.91046 0.82370 1.43921 0.90414 1.44656 1.15181 0.99571 1.68046 1.21735 0.86340 0.94864 0.94250 1.22347 0.97082 0.97261 0.98455 1.23578 1.06373 1.02407 0.91435 0.88675 1.23359 1.03843 1.03086 0.94144 1.21943 0.94357 0.83976 0.99951 0.88047 0.93439 0.95707 0.89589 0.92138 0.92972 0.89881 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.18 10.87 55.49 0.60 -26.57 14 2 C 0.00 -0.11 5.37 -17.43 -0.09 -0.21 14 3 Si 0.92 22.08 29.56 -169.99 -5.03 17.05 14 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 14 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 14 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 7 C -0.24 -6.75 10.29 -15.06 -0.15 -6.90 14 8 H 0.08 2.13 7.85 -52.48 -0.41 1.72 14 9 N -0.56 -15.04 3.35 -161.69 -0.54 -15.58 14 10 C 0.15 3.90 5.39 -2.13 -0.01 3.89 14 11 C -0.11 -2.36 7.00 -24.80 -0.17 -2.53 14 12 C -0.22 -4.31 7.25 -88.78 -0.64 -4.95 14 13 H 0.10 1.67 8.14 -51.93 -0.42 1.25 14 14 C -0.20 -4.03 9.84 -26.65 -0.26 -4.29 14 15 C 0.11 2.47 7.48 -66.73 -0.50 1.97 14 16 H 0.10 2.13 8.14 -51.93 -0.42 1.71 14 17 H 0.26 7.30 8.31 -40.82 -0.34 6.96 14 18 H 0.02 0.66 7.28 -51.93 -0.38 0.28 14 19 H 0.09 2.39 6.59 -51.93 -0.34 2.04 14 20 H 0.06 1.24 8.14 -51.93 -0.42 0.82 14 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 14 22 H 0.08 1.76 7.14 -51.93 -0.37 1.39 14 23 H 0.08 1.40 8.14 -51.93 -0.42 0.98 14 LS Contribution 195.60 15.07 2.95 2.95 Total: -1.00 -30.02 195.60 -6.61 -36.63 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -2.75 Total: -1.46 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.84 Total: -13.02 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.06 Total: -42.15 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -30.02 -6.61 -36.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685966689.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.088 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds