Wall clock time and date at job start Mon Mar 30 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86800 * 119.99824 * 2 1 4 4 H 1.48498 * 109.46802 * 269.99466 * 3 2 1 5 5 H 1.48498 * 109.47429 * 29.99800 * 3 2 1 6 6 H 1.48502 * 109.46977 * 150.00171 * 3 2 1 7 7 C 1.40302 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00446 * 180.02562 * 7 2 1 9 9 C 1.40075 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.35037 * 119.99910 * 179.72455 * 9 7 2 11 11 C 1.52169 * 127.08679 * 179.71122 * 10 9 7 12 12 C 1.55159 * 103.04769 * 157.79389 * 11 10 9 13 13 N 1.48622 * 102.69811 * 37.44044 * 12 11 10 14 14 C 1.47901 * 105.34187 * 321.46945 * 13 12 11 15 15 H 0.96999 * 120.00017 * 0.02562 * 1 2 3 16 16 H 1.07997 * 120.00251 * 359.97438 * 9 7 2 17 17 H 1.09001 * 110.68092 * 276.31598 * 11 10 9 18 18 H 1.08999 * 110.68140 * 39.47272 * 11 10 9 19 19 H 1.09002 * 110.97406 * 279.06754 * 12 11 10 20 20 H 1.09012 * 110.63023 * 155.64925 * 12 11 10 21 21 H 1.00894 * 111.00278 * 201.24565 * 13 12 11 22 22 H 1.09000 * 109.86275 * 265.40273 * 14 13 12 23 23 H 1.09003 * 109.97796 * 144.36452 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4402 0.7000 7 6 2.0084 -1.2151 0.0005 8 1 3.0884 -1.2152 0.0010 9 6 1.3080 -2.4281 0.0005 10 6 1.9832 -3.5976 -0.0046 11 6 1.3908 -4.9992 0.0007 12 6 2.5388 -5.8669 -0.5796 13 7 3.7514 -5.2397 0.0079 14 6 3.4871 -3.7846 -0.0102 15 1 -0.4850 0.8400 -0.0004 16 1 0.2281 -2.4282 0.0005 17 1 1.1459 -5.3098 1.0165 18 1 0.5107 -5.0476 -0.6404 19 1 2.5616 -5.8066 -1.6677 20 1 2.4418 -6.9018 -0.2511 21 1 4.5729 -5.4647 -0.5328 22 1 3.9121 -3.3422 -0.9112 23 1 3.9219 -3.3162 0.8728 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687677313.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:39 Heat of formation + Delta-G solvation = -3.818443 kcal Electronic energy + Delta-G solvation = -7892.086941 eV Core-core repulsion = 6318.496301 eV Total energy + Delta-G solvation = -1573.590640 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.07692 -33.91184 -30.74429 -28.43577 -26.06633 -22.77235 -20.59171 -17.69503 -16.33811 -15.62281 -14.58578 -14.22910 -12.89781 -12.35627 -12.10743 -11.37096 -11.27635 -11.16760 -10.98400 -10.56965 -10.32149 -9.70728 -9.48565 -9.00439 -7.87683 -7.39897 -6.76206 -4.22711 2.95043 3.08936 3.14532 3.84716 3.97725 5.18625 5.41568 5.93118 6.01564 6.18525 6.43085 6.71983 6.89653 7.02927 7.15527 7.19115 7.29936 7.51459 7.84309 8.14264 8.47336 8.66358 9.05873 9.27355 10.27344 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.105900 B = 0.014562 C = 0.013032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.336910 B = 1922.302291 C = 2148.059401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.071 0.929 9 C 0.072 3.928 10 C -0.407 4.407 11 C -0.048 4.048 12 C 0.043 3.957 13 N -0.677 5.677 14 C 0.124 3.876 15 H 0.281 0.719 16 H 0.086 0.914 17 H 0.042 0.958 18 H 0.041 0.959 19 H 0.029 0.971 20 H 0.060 0.940 21 H 0.318 0.682 22 H 0.012 0.988 23 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 -1.951 -1.313 3.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.089 0.911 9 C 0.051 3.949 10 C -0.411 4.411 11 C -0.086 4.086 12 C -0.087 4.087 13 N -0.304 5.304 14 C -0.004 4.004 15 H 0.092 0.908 16 H 0.104 0.896 17 H 0.060 0.940 18 H 0.060 0.940 19 H 0.048 0.952 20 H 0.078 0.922 21 H 0.131 0.869 22 H 0.030 0.970 23 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.482 -1.913 -0.589 3.188 hybrid contribution 0.424 1.033 -1.000 1.499 sum 2.906 -0.880 -1.588 3.426 Atomic orbital electron populations 1.69563 1.07719 1.29526 1.37842 1.26126 0.94803 1.01785 0.91685 0.86243 0.80442 0.80399 0.79173 1.19461 1.20257 1.18514 1.19524 0.94695 0.90585 1.43687 0.91113 1.19229 0.96366 0.90555 0.88729 1.21322 0.92037 0.92386 1.35366 1.20880 0.95001 0.94884 0.97790 1.22966 0.92204 0.97514 0.95974 1.63236 1.03974 1.09814 1.53390 1.20756 0.96574 0.85533 0.97517 0.90836 0.89627 0.93951 0.94040 0.95215 0.92160 0.86924 0.96971 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.98 12.86 55.57 0.71 -21.26 14 2 C 0.07 1.89 5.50 -17.26 -0.09 1.80 14 3 Si 0.91 19.41 29.56 -169.99 -5.03 14.38 14 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 14 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 14 6 H -0.26 -5.52 7.11 56.52 0.40 -5.12 14 7 C -0.45 -12.59 8.86 -38.12 -0.34 -12.92 14 8 H 0.07 1.92 7.12 -52.49 -0.37 1.55 14 9 C 0.07 2.00 9.34 -40.03 -0.37 1.62 14 10 C -0.41 -10.47 6.28 -99.34 -0.62 -11.09 14 11 C -0.05 -1.08 6.92 -26.01 -0.18 -1.26 14 12 C 0.04 0.84 7.60 -1.73 -0.01 0.82 14 13 N -0.68 -13.85 7.55 -111.25 -0.84 -14.68 14 14 C 0.12 2.93 6.25 -4.01 -0.03 2.90 14 15 H 0.28 6.83 8.29 -40.82 -0.34 6.49 14 16 H 0.09 2.46 7.42 -52.49 -0.39 2.08 14 17 H 0.04 0.94 8.14 -51.93 -0.42 0.52 14 18 H 0.04 0.89 8.14 -51.93 -0.42 0.46 14 19 H 0.03 0.56 8.14 -51.93 -0.42 0.13 14 20 H 0.06 1.04 8.14 -51.92 -0.42 0.61 14 21 H 0.32 5.56 8.92 -39.29 -0.35 5.21 14 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 14 23 H 0.05 1.23 8.14 -51.93 -0.42 0.80 14 LS Contribution 202.64 15.07 3.05 3.05 Total: -1.00 -28.04 202.64 -6.53 -34.57 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -2.78 Total: 2.07 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -1.65 Total: -18.13 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.12 Total: -35.95 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -28.04 -6.53 -34.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687677313.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.755 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds