Wall clock time and date at job start Mon Mar 30 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86800 * 119.99824 * 2 1 4 4 H 1.48498 * 109.46802 * 269.99466 * 3 2 1 5 5 H 1.48498 * 109.47429 * 29.99800 * 3 2 1 6 6 H 1.48502 * 109.46977 * 150.00171 * 3 2 1 7 7 C 1.40302 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00446 * 180.02562 * 7 2 1 9 9 C 1.40075 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.35037 * 119.99910 * 179.72455 * 9 7 2 11 11 C 1.52169 * 127.08679 * 179.71122 * 10 9 7 12 12 C 1.55159 * 103.04769 * 157.79389 * 11 10 9 13 13 N 1.48622 * 102.69811 * 37.44044 * 12 11 10 14 14 C 1.47901 * 105.34187 * 321.46945 * 13 12 11 15 15 H 0.96999 * 120.00017 * 0.02562 * 1 2 3 16 16 H 1.07997 * 120.00251 * 359.97438 * 9 7 2 17 17 H 1.09001 * 110.68092 * 276.31598 * 11 10 9 18 18 H 1.08999 * 110.68140 * 39.47272 * 11 10 9 19 19 H 1.09002 * 110.97406 * 279.06754 * 12 11 10 20 20 H 1.09012 * 110.63023 * 155.64925 * 12 11 10 21 21 H 1.00894 * 111.00278 * 201.24565 * 13 12 11 22 22 H 1.09000 * 109.86275 * 265.40273 * 14 13 12 23 23 H 1.09003 * 109.97796 * 144.36452 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4402 0.7000 7 6 2.0084 -1.2151 0.0005 8 1 3.0884 -1.2152 0.0010 9 6 1.3080 -2.4281 0.0005 10 6 1.9832 -3.5976 -0.0046 11 6 1.3908 -4.9992 0.0007 12 6 2.5388 -5.8669 -0.5796 13 7 3.7514 -5.2397 0.0079 14 6 3.4871 -3.7846 -0.0102 15 1 -0.4850 0.8400 -0.0004 16 1 0.2281 -2.4282 0.0005 17 1 1.1459 -5.3098 1.0165 18 1 0.5107 -5.0476 -0.6404 19 1 2.5616 -5.8066 -1.6677 20 1 2.4418 -6.9018 -0.2511 21 1 4.5729 -5.4647 -0.5328 22 1 3.9121 -3.3422 -0.9112 23 1 3.9219 -3.3162 0.8728 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687677313.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:39 Heat of formation + Delta-G solvation = -23.172367 kcal Electronic energy + Delta-G solvation = -7892.926190 eV Core-core repulsion = 6318.496301 eV Total energy + Delta-G solvation = -1574.429889 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 153.085 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.86663 -35.89703 -32.71013 -30.21631 -27.98283 -24.75847 -22.29241 -19.65052 -18.38058 -17.40934 -16.33441 -15.98393 -14.78691 -14.18955 -13.98876 -13.11536 -13.05731 -12.88955 -12.78297 -12.24808 -12.18266 -11.60269 -11.39024 -11.01521 -9.68070 -9.32265 -8.72441 -6.30278 1.22280 1.36457 1.51111 1.90659 2.20235 3.32659 3.56938 4.26018 4.33438 4.50389 4.76377 4.86038 5.03356 5.14672 5.23854 5.27129 5.38739 5.67168 5.93683 6.36917 6.55351 6.67199 6.99161 7.19610 8.33538 Molecular weight = 153.08amu Principal moments of inertia in cm(-1) A = 0.105900 B = 0.014562 C = 0.013032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.336910 B = 1922.302291 C = 2148.059401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.487 4.487 8 H 0.068 0.932 9 C 0.041 3.959 10 C -0.414 4.414 11 C -0.056 4.056 12 C 0.050 3.950 13 N -0.676 5.676 14 C 0.128 3.872 15 H 0.292 0.708 16 H 0.063 0.937 17 H 0.042 0.958 18 H 0.046 0.954 19 H 0.041 0.959 20 H 0.092 0.908 21 H 0.339 0.661 22 H 0.011 0.989 23 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 -2.033 -1.591 4.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.517 4.517 8 H 0.086 0.914 9 C 0.021 3.979 10 C -0.419 4.419 11 C -0.093 4.093 12 C -0.079 4.079 13 N -0.305 5.305 14 C 0.000 4.000 15 H 0.102 0.898 16 H 0.081 0.919 17 H 0.060 0.940 18 H 0.064 0.936 19 H 0.059 0.941 20 H 0.111 0.889 21 H 0.154 0.846 22 H 0.029 0.971 23 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.484 -2.026 -0.873 4.124 hybrid contribution 0.072 0.945 -0.910 1.314 sum 3.556 -1.081 -1.783 4.123 Atomic orbital electron populations 1.69616 1.09239 1.31195 1.37979 1.27058 0.95674 1.05290 0.90548 0.85097 0.78873 0.75403 0.79675 1.18389 1.18815 1.18312 1.19710 0.94694 0.91653 1.45620 0.91367 1.19275 0.95457 0.92057 0.91137 1.21852 0.93876 0.93396 1.32730 1.20983 0.96447 0.93608 0.98268 1.22993 0.90076 0.98333 0.96501 1.63166 1.05329 1.07540 1.54417 1.20616 0.94842 0.87683 0.96906 0.89807 0.91905 0.93965 0.93585 0.94106 0.88949 0.84617 0.97062 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.32 12.86 21.89 0.28 -46.04 14 2 C 0.03 1.45 5.50 85.36 0.47 1.92 14 3 Si 0.99 39.40 29.56 68.60 2.03 41.43 14 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 14 5 H -0.26 -9.85 7.11 99.48 0.71 -9.15 14 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 14 7 C -0.49 -27.49 8.86 23.22 0.21 -27.29 14 8 H 0.07 3.77 7.12 -2.91 -0.02 3.75 14 9 C 0.04 2.36 9.34 21.98 0.21 2.57 14 10 C -0.41 -21.41 6.28 -16.44 -0.10 -21.51 14 11 C -0.06 -2.42 6.92 31.06 0.21 -2.21 14 12 C 0.05 1.80 7.60 86.71 0.66 2.46 14 13 N -0.68 -25.89 7.55 -505.88 -3.82 -29.71 14 14 C 0.13 5.93 6.25 85.64 0.54 6.47 14 15 H 0.29 14.16 8.29 -92.71 -0.77 13.39 14 16 H 0.06 3.79 7.42 -2.91 -0.02 3.77 14 17 H 0.04 1.83 8.14 -2.39 -0.02 1.81 14 18 H 0.05 1.93 8.14 -2.39 -0.02 1.91 14 19 H 0.04 1.39 8.14 -2.39 -0.02 1.37 14 20 H 0.09 2.79 8.14 -2.38 -0.02 2.77 14 21 H 0.34 10.77 8.92 -89.70 -0.80 9.97 14 22 H 0.01 0.52 8.14 -2.39 -0.02 0.50 14 23 H 0.04 1.88 8.14 -2.39 -0.02 1.86 14 Total: -1.00 -59.63 202.64 1.07 -58.56 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.39 Total: 13.35 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 2.19 Total: -37.60 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -3.54 Total: -75.74 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -59.63 1.07 -58.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687677313.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.383 kcal (2) G-P(sol) polarization free energy of solvation -59.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds