Wall clock time and date at job start Mon Mar 30 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86795 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00545 * 3 2 1 5 5 H 1.48502 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46947 * 120.00676 * 3 2 1 7 7 C 1.40311 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.40073 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.35028 * 119.99848 * 180.28027 * 9 7 2 11 11 C 1.50702 * 120.00173 * 179.72408 * 10 9 7 12 12 C 1.53780 * 113.61690 * 219.13604 * 11 10 9 13 13 C 1.53948 * 87.01944 * 220.04539 * 12 11 10 14 14 C 1.53778 * 87.11523 * 25.35768 * 13 12 11 15 15 H 0.96999 * 119.99846 * 359.97438 * 1 2 3 16 16 H 1.08002 * 119.99704 * 359.97438 * 9 7 2 17 17 H 1.08002 * 120.00386 * 359.71464 * 10 9 7 18 18 H 1.09002 * 112.84290 * 350.32519 * 11 10 9 19 19 H 1.09007 * 113.60942 * 334.56302 * 12 11 10 20 20 H 1.09001 * 113.61529 * 105.46199 * 12 11 10 21 21 H 1.09003 * 113.54040 * 270.80859 * 13 12 11 22 22 H 1.08996 * 113.74889 * 139.94007 * 13 12 11 23 23 H 1.08995 * 113.62435 * 220.09141 * 14 13 12 24 24 H 1.09005 * 113.61054 * 89.18347 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6965 -1.2125 5 1 1.2760 2.7465 0.0006 6 1 3.0948 1.6962 1.2125 7 6 2.0084 -1.2152 -0.0005 8 1 3.0884 -1.2151 -0.0010 9 6 1.3080 -2.4282 -0.0005 10 6 1.9832 -3.5976 0.0047 11 6 1.2297 -4.9027 0.0109 12 6 1.8685 -5.9785 0.9050 13 6 1.5197 -6.9906 -0.2013 14 6 1.5592 -5.8102 -1.1860 15 1 -0.4850 0.8400 0.0004 16 1 0.2280 -2.4281 0.0003 17 1 3.0632 -3.5977 0.0042 18 1 0.1606 -4.7733 0.1795 19 1 2.9402 -5.8442 1.0518 20 1 1.3303 -6.1470 1.8378 21 1 0.5298 -7.4334 -0.0900 22 1 2.2978 -7.7331 -0.3783 23 1 0.7718 -5.8429 -1.9390 24 1 2.5463 -5.6298 -1.6119 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687677738.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:29 Heat of formation + Delta-G solvation = -9.770790 kcal Electronic energy + Delta-G solvation = -7617.892523 eV Core-core repulsion = 6109.469680 eV Total energy + Delta-G solvation = -1508.422842 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.35635 -36.06080 -32.92626 -28.21739 -26.28465 -24.79871 -20.81723 -20.10852 -18.79546 -16.84269 -16.05233 -15.68466 -14.55197 -13.93904 -13.21466 -13.18081 -13.06867 -12.95200 -12.49010 -12.05994 -11.57249 -11.48241 -11.22441 -11.10748 -10.70003 -9.62724 -8.69574 -6.31164 1.25759 1.35220 1.48727 1.95312 2.20868 3.34252 4.01308 4.02732 4.07871 4.48610 4.76478 4.87078 5.01891 5.05311 5.12170 5.21941 5.22426 5.36212 5.53616 5.77115 5.95370 6.39422 6.61032 7.03292 7.20709 8.36257 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.142317 B = 0.011391 C = 0.011106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 196.697072 B = 2457.412423 C = 2520.547091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.020 3.980 10 C -0.395 4.395 11 C -0.051 4.051 12 C -0.135 4.135 13 C -0.125 4.125 14 C -0.139 4.139 15 H 0.291 0.709 16 H 0.057 0.943 17 H 0.063 0.937 18 H 0.056 0.944 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 -4.472 -0.197 4.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.000 4.000 10 C -0.417 4.417 11 C -0.069 4.069 12 C -0.173 4.173 13 C -0.162 4.162 14 C -0.176 4.176 15 H 0.101 0.899 16 H 0.076 0.924 17 H 0.081 0.919 18 H 0.074 0.926 19 H 0.087 0.913 20 H 0.081 0.919 21 H 0.106 0.894 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.686 -4.327 -0.197 4.648 hybrid contribution 0.163 0.842 -0.002 0.858 sum 1.849 -3.485 -0.198 3.951 Atomic orbital electron populations 1.69620 1.09206 1.31103 1.38645 1.27072 0.95754 1.05316 0.90630 0.85129 0.78600 0.75054 0.80112 1.18337 1.18706 1.18332 1.19777 0.94499 0.92244 1.46856 0.91870 1.20005 0.95700 0.93446 0.90853 1.22211 0.95614 0.92863 1.31028 1.20981 0.96768 0.92495 0.96702 1.22972 1.00330 0.96538 0.97417 1.22800 1.02206 0.95660 0.95582 1.22982 1.00926 0.96881 0.96822 0.89914 0.92432 0.91910 0.92565 0.91267 0.91923 0.89378 0.90298 0.92296 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.98 12.86 21.89 0.28 -47.69 14 2 C 0.02 1.34 5.50 85.37 0.47 1.81 14 3 Si 0.99 40.48 29.56 68.60 2.03 42.51 14 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 14 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 14 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 14 7 C -0.50 -29.57 9.05 23.22 0.21 -29.36 14 8 H 0.06 3.63 7.85 -2.91 -0.02 3.61 14 9 C 0.02 1.18 9.03 21.98 0.20 1.38 14 10 C -0.40 -21.00 8.97 24.95 0.22 -20.77 14 11 C -0.05 -2.22 4.02 -11.01 -0.04 -2.27 14 12 C -0.14 -4.81 7.64 31.18 0.24 -4.57 14 13 C -0.13 -3.71 8.09 31.18 0.25 -3.45 14 14 C -0.14 -5.04 7.63 31.12 0.24 -4.80 14 15 H 0.29 14.55 8.29 -92.71 -0.77 13.78 14 16 H 0.06 3.56 7.38 -2.91 -0.02 3.54 14 17 H 0.06 3.40 8.05 -2.91 -0.02 3.38 14 18 H 0.06 2.52 8.05 -2.39 -0.02 2.50 14 19 H 0.07 2.48 8.09 -2.38 -0.02 2.46 14 20 H 0.06 2.07 8.14 -2.39 -0.02 2.05 14 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 14 22 H 0.08 1.98 8.14 -2.39 -0.02 1.96 14 23 H 0.06 2.03 8.14 -2.39 -0.02 2.01 14 24 H 0.07 2.51 8.09 -2.38 -0.02 2.49 14 Total: -1.00 -60.71 212.06 5.24 -55.47 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.15 Total: 11.76 kcal Atomic # 6 Polarization: -63.83 SS G_CDS: 1.79 Total: -62.04 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.28 Total: -47.69 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -60.71 5.24 -55.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687677738.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.698 kcal (2) G-P(sol) polarization free energy of solvation -60.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds