Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99542 * 2 1 4 4 H 1.48498 * 109.47164 * 239.99185 * 3 2 1 5 5 H 1.48497 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.47039 * 119.99796 * 3 2 1 7 7 C 1.37877 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99985 * 0.02562 * 7 2 1 10 10 H 1.08998 * 115.50485 * 325.97180 * 9 7 2 11 11 C 1.53105 * 117.44848 * 111.38939 * 9 7 2 12 12 H 1.08994 * 119.10723 * 220.04009 * 11 9 7 13 13 O 1.43814 * 118.06826 * 13.04798 * 11 9 7 14 14 C 1.44368 * 106.94883 * 92.64001 * 13 11 9 15 15 C 1.54997 * 103.49611 * 320.04754 * 14 13 11 16 16 C 1.54102 * 61.41741 * 108.46231 * 11 9 7 17 17 H 1.09001 * 122.25477 * 108.49886 * 16 11 9 18 18 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 19 19 H 1.08996 * 110.61809 * 201.54797 * 14 13 11 20 20 H 1.09000 * 110.75603 * 78.61442 * 14 13 11 21 21 H 1.09001 * 110.87304 * 155.26922 * 15 14 13 22 22 H 1.09003 * 110.86801 * 278.95090 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.3102 -2.4979 0.5507 11 6 1.3279 -3.3584 -1.2644 12 1 0.4308 -3.8698 -1.6132 13 8 2.3216 -3.0254 -2.2493 14 6 3.4924 -3.8150 -1.9495 15 6 3.5672 -3.7778 -0.4018 16 6 2.0732 -3.8354 -0.0027 17 1 1.7364 -4.6903 0.5836 18 1 -0.4850 0.8400 -0.0004 19 1 4.3824 -3.3633 -2.3877 20 1 3.3691 -4.8385 -2.3034 21 1 4.1053 -4.6446 -0.0181 22 1 4.0258 -2.8509 -0.0573 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710021342.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = -33.545728 kcal Electronic energy + Delta-G solvation = -8318.190769 eV Core-core repulsion = 6645.592395 eV Total energy + Delta-G solvation = -1672.598374 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.58913 -35.29380 -33.65544 -31.14263 -27.67046 -24.01236 -22.08668 -21.15569 -18.29771 -17.31290 -16.77544 -15.99637 -15.49210 -14.27852 -14.17107 -13.68683 -12.81709 -12.78092 -12.61881 -12.28082 -12.00534 -11.49103 -11.24609 -10.75990 -10.16411 -9.86156 -8.19586 -6.21195 1.40379 1.43702 1.51220 2.40950 2.72984 3.18249 3.42827 4.04818 4.17857 4.38825 4.45679 4.63074 4.64027 4.96332 5.05572 5.18337 5.31696 5.43297 5.76960 6.16528 6.42780 6.80771 7.38962 8.92467 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.076786 B = 0.020102 C = 0.018505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.561865 B = 1392.542139 C = 1512.723287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.492 4.492 8 H 0.059 0.941 9 C 0.009 3.991 10 H 0.065 0.935 11 C -0.034 4.034 12 H 0.108 0.892 13 O -0.378 6.378 14 C 0.044 3.956 15 C -0.115 4.115 16 C -0.207 4.207 17 H 0.123 0.877 18 H 0.264 0.736 19 H 0.096 0.904 20 H 0.072 0.928 21 H 0.102 0.898 22 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -5.549 -0.716 8.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.529 4.529 8 H 0.077 0.923 9 C -0.010 4.010 10 H 0.083 0.917 11 C -0.093 4.093 12 H 0.126 0.874 13 O -0.298 6.298 14 C -0.032 4.032 15 C -0.153 4.153 16 C -0.225 4.225 17 H 0.141 0.859 18 H 0.073 0.927 19 H 0.114 0.886 20 H 0.090 0.910 21 H 0.120 0.880 22 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.736 -5.286 -0.898 7.852 hybrid contribution -0.016 0.654 0.059 0.656 sum 5.720 -4.633 -0.839 7.408 Atomic orbital electron populations 1.70067 1.07586 1.27809 1.51290 1.25886 0.95793 1.03009 0.94410 0.85512 0.78330 0.78239 0.79015 1.19881 1.20658 1.18797 1.20763 0.92823 0.90266 1.49077 0.92288 1.21060 0.95993 0.89545 0.94418 0.91672 1.24270 0.93985 1.07223 0.83780 0.87448 1.88642 1.24993 1.65187 1.50960 1.23902 0.88637 0.95768 0.94862 1.22621 0.94507 1.02596 0.95536 1.24830 0.93902 1.01071 1.02740 0.85902 0.92748 0.88633 0.90960 0.88005 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.12 21.45 0.28 -56.22 14 2 C 0.01 0.43 5.46 84.65 0.46 0.89 14 3 Si 0.96 45.10 29.54 68.60 2.03 47.13 14 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 14 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 14 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 14 7 C -0.49 -28.33 8.44 25.60 0.22 -28.11 14 8 H 0.06 3.32 6.21 -2.91 -0.02 3.30 14 9 C 0.01 0.45 5.66 -10.14 -0.06 0.40 14 10 H 0.07 3.70 7.89 -2.39 -0.02 3.69 14 11 C -0.03 -1.62 7.43 31.00 0.23 -1.39 14 12 H 0.11 4.73 8.14 -2.39 -0.02 4.71 14 13 O -0.38 -18.12 11.00 -148.98 -1.64 -19.76 14 14 C 0.04 1.58 7.72 72.67 0.56 2.14 14 15 C -0.12 -4.16 6.65 31.87 0.21 -3.94 14 16 C -0.21 -8.62 7.25 -8.46 -0.06 -8.68 14 17 H 0.12 4.35 8.14 -2.39 -0.02 4.33 14 18 H 0.26 15.13 8.31 -92.71 -0.77 14.36 14 19 H 0.10 3.01 8.14 -2.39 -0.02 2.99 14 20 H 0.07 2.15 8.14 -2.39 -0.02 2.13 14 21 H 0.10 2.81 8.14 -2.39 -0.02 2.79 14 22 H 0.06 2.45 6.43 -2.39 -0.02 2.43 14 Total: -1.00 -65.17 193.15 3.43 -61.74 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.20 Total: 5.82 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 1.56 Total: -38.71 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.64 Total: -19.76 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.17 3.43 -61.74 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710021342.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.191 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds