Wall clock time and date at job start Mon Mar 30 2020 02:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00221 * 2 1 4 4 H 1.48499 * 109.47289 * 270.00151 * 3 2 1 5 5 H 1.48507 * 109.47312 * 30.00338 * 3 2 1 6 6 H 1.48505 * 109.47294 * 150.00096 * 3 2 1 7 7 C 1.37878 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99947 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00118 * 180.02562 * 7 2 1 10 10 C 1.54829 * 119.62472 * 180.02562 * 9 7 2 11 11 C 1.55232 * 81.38796 * 161.13562 * 10 9 7 12 12 C 1.55742 * 118.92467 * 277.24041 * 9 7 2 13 13 C 1.56789 * 101.25460 * 62.17103 * 11 10 9 14 14 O 1.45583 * 99.23074 * 316.84217 * 13 11 10 15 15 H 0.97006 * 119.99887 * 359.97438 * 1 2 3 16 16 H 1.09002 * 114.55749 * 47.99810 * 10 9 7 17 17 H 1.08997 * 114.55227 * 274.26617 * 10 9 7 18 18 H 1.09005 * 121.31088 * 196.98492 * 11 10 9 19 19 H 1.09007 * 114.64335 * 85.36545 * 12 9 7 20 20 H 1.08997 * 114.65771 * 311.34598 * 12 9 7 21 21 H 1.09000 * 111.44934 * 74.30977 * 13 11 10 22 22 H 1.08996 * 111.45034 * 199.30663 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.2768 -2.5400 -0.0012 11 6 5.4246 -1.6195 -0.4959 12 6 4.2653 -1.0214 -1.3518 13 6 5.5933 -0.6555 0.7290 14 8 4.1899 -0.4041 1.0234 15 1 -0.4850 0.8401 0.0004 16 1 3.9243 -3.2609 -0.7388 17 1 4.4361 -2.9713 0.9871 18 1 6.3121 -2.0299 -0.9777 19 1 4.4152 0.0135 -1.6597 20 1 3.9127 -1.6686 -2.1549 21 1 6.0918 -1.1522 1.5614 22 1 6.1121 0.2606 0.4467 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716115555.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:14 Heat of formation + Delta-G solvation = -2.822061 kcal Electronic energy + Delta-G solvation = -8569.385480 eV Core-core repulsion = 6898.119384 eV Total energy + Delta-G solvation = -1671.266096 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.97828 -34.76660 -34.16266 -29.96304 -26.60601 -26.03871 -21.98281 -20.83728 -19.00802 -17.40384 -16.34976 -15.79237 -15.50066 -14.77115 -13.79471 -13.51295 -13.11288 -12.82882 -12.57326 -12.27693 -11.88147 -11.73557 -11.15148 -10.99950 -10.67408 -9.82265 -8.39642 -6.50861 1.34909 1.38668 1.68694 2.41786 2.84823 3.24704 3.44065 3.73796 4.06856 4.22011 4.52128 4.69733 4.81683 4.92977 4.99720 5.04283 5.15791 5.33946 5.58715 5.99645 6.24935 6.58245 7.24223 8.73848 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.075489 B = 0.027741 C = 0.023721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.823828 B = 1009.109952 C = 1180.090241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.029 3.971 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.199 1.199 7 C -0.505 4.505 8 H 0.049 0.951 9 C 0.152 3.848 10 C -0.164 4.164 11 C -0.136 4.136 12 C -0.166 4.166 13 C 0.034 3.966 14 O -0.397 6.397 15 H 0.269 0.731 16 H 0.092 0.908 17 H 0.059 0.941 18 H 0.145 0.855 19 H 0.051 0.949 20 H 0.101 0.899 21 H 0.091 0.909 22 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 -0.459 -1.561 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.171 4.171 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.121 1.121 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.113 3.887 10 C -0.202 4.202 11 C -0.154 4.154 12 C -0.204 4.204 13 C -0.042 4.042 14 O -0.318 6.318 15 H 0.078 0.922 16 H 0.110 0.890 17 H 0.078 0.922 18 H 0.162 0.838 19 H 0.069 0.931 20 H 0.120 0.880 21 H 0.109 0.891 22 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.851 -0.237 -1.368 11.932 hybrid contribution -0.369 0.516 -0.061 0.638 sum 11.482 0.279 -1.428 11.574 Atomic orbital electron populations 1.70031 1.08292 1.28566 1.50700 1.25860 0.95368 1.03513 0.92316 0.86263 0.82458 0.77523 0.79140 1.19920 1.22296 1.12079 1.20519 0.88219 0.93594 1.51837 0.93317 1.21925 0.90666 0.89735 0.86325 1.24342 0.97734 0.97238 1.00857 1.24886 0.96887 0.97234 0.96386 1.24577 0.97751 1.00180 0.97929 1.24062 0.84811 0.98616 0.96740 1.89927 1.18022 1.70134 1.53705 0.92189 0.88981 0.92250 0.83785 0.93071 0.88034 0.89139 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.85 13.96 21.45 0.30 -59.55 14 2 C 0.03 1.78 5.47 84.66 0.46 2.24 14 3 Si 0.92 46.23 26.67 68.60 1.83 48.06 14 4 H -0.27 -13.10 7.11 99.48 0.71 -12.39 14 5 H -0.30 -14.76 7.11 99.48 0.71 -14.05 14 6 H -0.20 -9.53 4.95 99.48 0.49 -9.04 14 7 C -0.50 -30.02 9.91 25.60 0.25 -29.76 14 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 14 9 C 0.15 7.33 1.26 -15.33 -0.02 7.31 14 10 C -0.16 -6.38 7.37 27.82 0.21 -6.17 14 11 C -0.14 -4.36 6.47 -13.02 -0.08 -4.45 14 12 C -0.17 -6.60 7.32 28.42 0.21 -6.39 14 13 C 0.03 1.15 7.92 73.31 0.58 1.73 14 14 O -0.40 -18.77 8.43 -148.98 -1.26 -20.02 14 15 H 0.27 16.06 8.31 -92.70 -0.77 15.29 14 16 H 0.09 3.37 7.83 -2.39 -0.02 3.36 14 17 H 0.06 2.26 8.11 -2.39 -0.02 2.24 14 18 H 0.14 3.38 8.14 -2.38 -0.02 3.36 14 19 H 0.05 2.02 7.67 -2.38 -0.02 2.01 14 20 H 0.10 3.80 7.83 -2.39 -0.02 3.78 14 21 H 0.09 2.63 8.14 -2.39 -0.02 2.62 14 22 H 0.08 2.45 8.14 -2.39 -0.02 2.43 14 Total: -1.00 -67.76 186.17 3.46 -64.30 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 0.98 Total: 2.71 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 1.61 Total: -35.50 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -1.26 Total: -20.02 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.83 Total: 48.06 kcal Total: -67.76 3.46 -64.30 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716115555.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.479 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds