Wall clock time and date at job start Mon Mar 30 2020 02:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 115.55094 * 2 1 4 4 C 1.52998 * 117.49473 * 214.32661 * 2 1 3 5 5 C 1.52999 * 117.49564 * 145.66900 * 2 1 3 6 6 H 1.08997 * 117.50050 * 359.97438 * 5 2 1 7 7 C 1.53007 * 117.49757 * 215.00358 * 5 2 1 8 8 C 1.50700 * 109.47041 * 175.00093 * 7 5 2 9 9 H 1.08007 * 119.99952 * 359.97438 * 8 7 5 10 10 C 1.37874 * 120.00018 * 179.97438 * 8 7 5 11 11 N 1.31519 * 119.99717 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00264 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47006 * 89.99751 * 12 10 8 14 14 H 1.48492 * 109.47264 * 210.00153 * 12 10 8 15 15 H 1.48502 * 109.47045 * 330.00431 * 12 10 8 16 16 H 1.09001 * 109.47002 * 34.41649 * 1 2 3 17 17 H 1.08993 * 109.46955 * 154.42086 * 1 2 3 18 18 H 1.09000 * 109.47050 * 274.41915 * 1 2 3 19 19 H 1.08997 * 109.46759 * 85.58170 * 3 2 1 20 20 H 1.08993 * 109.46954 * 205.58320 * 3 2 1 21 21 H 1.08995 * 109.47058 * 325.58161 * 3 2 1 22 22 H 1.08992 * 117.50074 * 0.02562 * 4 2 1 23 23 H 1.09001 * 117.49625 * 145.02619 * 4 2 1 24 24 H 1.09001 * 109.46711 * 294.99445 * 7 5 2 25 25 H 1.08996 * 109.47200 * 54.99848 * 7 5 2 26 26 H 0.97001 * 119.99872 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2364 -1.1208 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8578 1.2693 7 6 3.5487 -0.7753 1.4723 8 6 4.0214 -1.9670 2.2645 9 1 3.4433 -2.8794 2.2642 10 6 5.1917 -1.8926 2.9896 11 7 5.8957 -0.7817 2.9895 12 14 5.7772 -3.3694 3.9722 13 1 6.6505 -4.2161 3.1203 14 1 6.5422 -2.9041 5.1568 15 1 4.6043 -4.1623 4.4205 16 1 -0.3633 0.8478 -0.5808 17 1 -0.3633 -0.9269 -0.4437 18 1 -0.3633 0.0792 1.0246 19 1 2.2752 1.7423 1.0246 20 1 3.1829 1.3084 -0.4437 21 1 1.5819 2.0738 -0.5808 22 1 1.6112 -1.8578 -1.2691 23 1 3.1715 -0.8749 -1.2685 24 1 4.3021 -0.5103 0.7304 25 1 3.3884 0.0675 2.1445 26 1 6.7189 -0.7292 3.5000 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885219629.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:09 Heat of formation + Delta-G solvation = -19.409086 kcal Electronic energy + Delta-G solvation = -8219.215125 eV Core-core repulsion = 6683.062857 eV Total energy + Delta-G solvation = -1536.152269 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 154.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.41792 -35.03965 -31.37692 -29.10552 -28.24483 -25.22261 -21.72959 -19.40663 -18.47832 -16.60236 -15.72559 -15.14004 -14.70026 -14.16513 -13.93371 -13.33343 -13.17538 -12.88995 -12.66451 -12.59250 -12.35715 -12.02612 -11.51446 -11.31858 -10.79102 -10.35599 -10.10867 -8.20033 -6.31034 1.38883 1.40830 1.52011 2.40450 2.96972 3.13655 3.95090 4.03688 4.17074 4.31909 4.79276 4.82607 4.85290 5.04667 5.08139 5.10532 5.15136 5.31486 5.32317 5.52206 5.60066 5.69358 5.84217 6.27468 6.84561 7.37573 8.91608 Molecular weight = 154.11amu Principal moments of inertia in cm(-1) A = 0.096308 B = 0.013575 C = 0.012712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 290.664816 B = 2062.087606 C = 2202.052911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.135 4.135 3 C -0.108 4.108 4 C -0.169 4.169 5 C -0.147 4.147 6 H 0.087 0.913 7 C 0.061 3.939 8 C -0.540 4.540 9 H 0.057 0.943 10 C -0.003 4.003 11 N -0.934 5.934 12 Si 0.967 3.033 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.264 1.264 16 H 0.076 0.924 17 H 0.063 0.937 18 H 0.055 0.945 19 H 0.043 0.957 20 H 0.039 0.961 21 H 0.081 0.919 22 H 0.105 0.895 23 H 0.077 0.923 24 H -0.010 1.010 25 H -0.008 1.008 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 0.352 -4.877 9.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C -0.165 4.165 4 C -0.206 4.206 5 C -0.165 4.165 6 H 0.105 0.895 7 C 0.024 3.976 8 C -0.578 4.578 9 H 0.076 0.924 10 C -0.200 4.200 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.188 1.188 16 H 0.095 0.905 17 H 0.082 0.918 18 H 0.074 0.926 19 H 0.062 0.938 20 H 0.058 0.942 21 H 0.100 0.900 22 H 0.124 0.876 23 H 0.095 0.905 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.699 0.433 -4.812 9.089 hybrid contribution 0.801 -0.567 0.633 1.167 sum -6.898 -0.134 -4.179 8.066 Atomic orbital electron populations 1.21311 0.90256 1.02691 1.01919 1.21803 0.95821 0.91235 1.04643 1.21250 0.99518 0.94573 1.01128 1.23245 1.01736 1.01572 0.94015 1.22564 0.99144 1.01028 0.93752 0.89472 1.18470 0.90572 0.95023 0.93535 1.21713 1.07521 0.99702 1.28890 0.92430 1.26009 0.96833 0.99205 0.97944 1.70104 1.16042 1.28347 1.42991 0.85418 0.78504 0.78928 0.78024 1.19717 1.20562 1.18777 0.90528 0.91838 0.92624 0.93801 0.94159 0.90022 0.87644 0.90483 0.99194 0.99014 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.82 9.85 71.98 0.71 -2.11 15 2 C -0.14 -4.73 2.70 -52.18 -0.14 -4.87 15 3 C -0.11 -3.69 8.86 71.98 0.64 -3.05 15 4 C -0.17 -6.18 9.47 30.62 0.29 -5.89 15 5 C -0.15 -6.46 5.42 -10.77 -0.06 -6.52 15 6 H 0.09 3.82 8.00 -2.39 -0.02 3.80 15 7 C 0.06 3.37 4.34 29.85 0.13 3.50 15 8 C -0.54 -32.06 9.08 25.60 0.23 -31.82 15 9 H 0.06 3.29 7.68 -2.91 -0.02 3.27 15 10 C 0.00 -0.15 5.46 84.65 0.46 0.31 15 11 N -0.93 -58.32 13.29 21.45 0.28 -58.03 15 12 Si 0.97 45.34 29.54 68.60 2.03 47.37 15 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 15 H -0.26 -11.81 7.11 99.48 0.71 -11.10 15 16 H 0.08 1.69 7.93 -2.39 -0.02 1.67 15 17 H 0.06 1.55 7.90 -2.39 -0.02 1.53 15 18 H 0.05 1.50 8.14 -2.39 -0.02 1.48 15 19 H 0.04 1.61 7.84 -2.39 -0.02 1.60 15 20 H 0.04 1.48 7.90 -2.39 -0.02 1.46 15 21 H 0.08 2.19 7.93 -2.39 -0.02 2.17 15 22 H 0.11 3.27 8.05 -2.39 -0.02 3.25 15 23 H 0.08 2.95 7.94 -2.39 -0.02 2.93 15 24 H -0.01 -0.61 7.88 -2.39 -0.02 -0.63 15 25 H -0.01 -0.50 7.77 -2.39 -0.02 -0.52 15 26 H 0.26 15.38 8.31 -92.71 -0.77 14.61 15 Total: -1.00 -64.93 222.57 5.69 -59.23 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 1.12 Total: 1.88 kcal Atomic # 6 Polarization: -52.71 SS G_CDS: 2.26 Total: -50.45 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.28 Total: -58.03 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.93 5.69 -59.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885219629.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.824 kcal (2) G-P(sol) polarization free energy of solvation -64.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds