Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99760 * 2 1 4 4 H 1.48504 * 109.46742 * 270.00009 * 3 2 1 5 5 H 1.48505 * 109.47198 * 29.99624 * 3 2 1 6 6 H 1.48498 * 109.47288 * 149.99970 * 3 2 1 7 7 C 1.37875 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99786 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00008 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.31874 * 119.13387 * 90.00439 * 10 9 7 12 12 C 1.38203 * 120.76322 * 179.97438 * 11 10 9 13 13 C 1.38651 * 119.16168 * 0.02562 * 12 11 10 14 14 C 1.38648 * 118.42097 * 359.95770 * 13 12 11 15 15 C 1.31869 * 119.13960 * 269.97581 * 10 9 7 16 16 H 0.96995 * 120.00461 * 359.97438 * 1 2 3 17 17 H 1.09002 * 109.46748 * 59.99974 * 9 7 2 18 18 H 1.08997 * 109.46967 * 299.99982 * 9 7 2 19 19 H 1.07996 * 119.61765 * 359.71678 * 11 10 9 20 20 H 1.08002 * 120.41636 * 179.97438 * 12 11 10 21 21 H 1.08006 * 120.78679 * 179.97438 * 13 12 11 22 22 H 1.08005 * 120.41449 * 180.02562 * 14 13 12 23 23 H 1.08000 * 119.61679 * 0.02562 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 3.9999 -2.5751 0.0013 11 6 4.2136 -3.1817 -1.1500 12 6 4.6746 -4.4840 -1.1880 13 6 4.9115 -5.1519 0.0037 14 6 4.6757 -4.4814 1.1941 15 6 4.2149 -3.1791 1.1537 16 1 -0.4850 0.8400 0.0004 17 1 3.8752 -0.6795 0.8895 18 1 3.8745 -0.6807 -0.8905 19 1 4.0222 -2.6561 -2.0738 20 1 4.8472 -4.9756 -2.1341 21 1 5.2715 -6.1702 0.0046 22 1 4.8498 -4.9707 2.1411 23 1 4.0285 -2.6499 2.0765 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003634186.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = 119.342793 kcal Electronic energy + Delta-G solvation = -8730.448304 eV Core-core repulsion = 7047.627934 eV Total energy + Delta-G solvation = -1682.820370 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 164.077 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -43.68949 -37.08808 -34.32678 -33.69444 -30.70703 -26.40635 -26.22689 -24.15406 -19.48584 -19.09106 -18.85874 -18.01040 -16.85314 -16.70746 -15.98884 -15.45422 -14.17765 -14.07468 -13.83604 -13.74224 -13.06448 -12.27598 -12.17022 -11.46446 -11.43645 -11.27770 -10.32801 -7.81433 -6.06051 -1.41664 -1.08682 0.69427 1.33913 1.86723 1.92558 2.08714 2.60415 2.67633 2.78236 2.80688 2.86017 3.08659 3.44523 3.70579 3.87713 3.98393 4.12474 4.21337 4.33919 4.68549 4.97367 5.29868 6.51678 7.04255 7.63121 9.27762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.097 3.903 3 Si 0.875 3.125 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.599 4.599 8 H 0.089 0.911 9 C 0.157 3.843 10 N -0.301 5.301 11 C 0.130 3.870 12 C -0.133 4.133 13 C -0.022 4.022 14 C -0.134 4.134 15 C 0.130 3.870 16 H 0.286 0.714 17 H 0.078 0.922 18 H 0.074 0.926 19 H 0.199 0.801 20 H 0.175 0.825 21 H 0.166 0.834 22 H 0.175 0.825 23 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 -11.061 0.009 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.115 4.115 3 Si 0.699 3.301 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.635 4.635 8 H 0.107 0.893 9 C 0.040 3.960 10 N 0.045 4.955 11 C -0.015 4.015 12 C -0.152 4.152 13 C -0.047 4.047 14 C -0.152 4.152 15 C -0.014 4.014 16 H 0.097 0.903 17 H 0.096 0.904 18 H 0.092 0.908 19 H 0.216 0.784 20 H 0.193 0.807 21 H 0.183 0.817 22 H 0.193 0.807 23 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 12.915 -10.619 0.009 16.720 hybrid contribution 0.164 0.864 -0.003 0.879 sum 13.079 -9.755 0.006 16.317 Atomic orbital electron populations 1.69755 1.06385 1.29556 1.42143 1.24757 0.94961 0.99316 0.92480 0.86878 0.79991 0.83224 0.79968 1.18779 1.19186 1.18918 1.20684 0.85101 0.96725 1.61007 0.89271 1.21668 0.99856 0.71593 1.02833 1.43297 1.29753 1.17108 1.05347 1.23098 0.91624 0.94798 0.91956 1.22073 0.98539 0.92856 1.01721 1.22318 0.89494 1.01297 0.91629 1.22072 0.98536 0.92844 1.01740 1.23087 0.91589 0.94833 0.91903 0.90280 0.90434 0.90839 0.78382 0.80733 0.81668 0.80729 0.78392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -11.85 13.96 55.43 0.77 -11.08 14 2 C 0.10 1.01 5.47 -17.82 -0.10 0.91 14 3 Si 0.88 6.41 27.47 -169.99 -4.67 1.75 14 4 H -0.26 -2.01 7.11 56.52 0.40 -1.61 14 5 H -0.27 -2.46 7.11 56.52 0.40 -2.06 14 6 H -0.26 -1.32 6.54 56.52 0.37 -0.95 14 7 C -0.60 -4.16 9.92 -34.44 -0.34 -4.51 14 8 H 0.09 0.85 8.06 -52.49 -0.42 0.43 14 9 C 0.16 -0.04 4.30 -5.19 -0.02 -0.06 14 10 N -0.30 1.55 2.40 -118.91 -0.29 1.26 14 11 C 0.13 -0.98 10.19 -17.55 -0.18 -1.16 14 12 C -0.13 1.32 10.11 -39.44 -0.40 0.92 14 13 C -0.02 0.23 10.18 -39.28 -0.40 -0.17 14 14 C -0.13 1.32 10.11 -39.44 -0.40 0.92 14 15 C 0.13 -0.98 10.19 -17.55 -0.18 -1.16 14 16 H 0.29 3.73 8.31 -40.82 -0.34 3.39 14 17 H 0.08 -0.07 7.00 -51.93 -0.36 -0.44 14 18 H 0.07 -0.10 7.38 -51.93 -0.38 -0.48 14 19 H 0.20 -1.78 7.96 -52.49 -0.42 -2.19 14 20 H 0.18 -2.13 8.06 -52.49 -0.42 -2.55 14 21 H 0.17 -2.10 8.06 -52.48 -0.42 -2.52 14 22 H 0.18 -2.12 8.06 -52.48 -0.42 -2.55 14 23 H 0.20 -1.76 7.96 -52.49 -0.42 -2.18 14 LS Contribution 205.89 15.07 3.10 3.10 Total: 0.00 -17.44 205.89 -5.53 -22.97 By element: Atomic # 1 Polarization: -11.27 SS G_CDS: -2.44 Total: -13.71 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.02 Total: -4.30 kcal Atomic # 7 Polarization: -10.30 SS G_CDS: 0.49 Total: -9.81 kcal Atomic # 14 Polarization: 6.41 SS G_CDS: -4.67 Total: 1.75 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -17.44 -5.53 -22.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003634186.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.313 kcal (2) G-P(sol) polarization free energy of solvation -17.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds